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AgBase

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AgBase
Content
Descriptionfunctional genomics resource for agriculture.
Contact
Research centerUniversity of Arizona
AuthorsFiona M McCarthy
Primary citationMcCarthy & al. (2006)
Release date2006
Access
Websitehttp://agbase.arizona.edu/

AgBase is a curated genomic database containing functional annotations of agriculturally important animals, plants, microbes and parasites. AgBase biocurators provides annotation of Gene Ontology terms and Plant ontology terms for gene products. By 2011 AgBase provided information for 18 organisms including horse, cat, dog, cotton, rice and soybean.

See also

References

  1. ^ McCarthy, Fiona M; Wang Nan; Magee G Bryce; Nanduri Bindu; Lawrence Mark L; Camon Evelyn B; Barrell Daniel G; Hill David P; Dolan Mary E; Williams W Paul; Luthe Dawn S; Bridges Susan M; Burgess Shane C (2006). "AgBase: a functional genomics resource for agriculture". BMC Genomics. 7. England: 229. doi:10.1186/1471-2164-7-229. PMC 1618847. PMID 16961921.
  2. Pillai, L; Chouvarine, P; Tudor, C. O.; Schmidt, C. J.; Vijay-Shanker, K; McCarthy, F. M. (2012). "Developing a biocuration workflow for Ag Base, a non-model organism database". Database. 2012: bas038. doi:10.1093/database/bas038. PMC 3500517. PMID 23160411.
  3. McCarthy, F. M.; Gresham, C. R.; Buza, T. J.; Chouvarine, P; Pillai, L. R.; Kumar, R; Ozkan, S; Wang, H; Manda, P; Arick, T; Bridges, S. M.; Burgess, S. C. (2011). "Ag Base: Supporting functional modeling in agricultural organisms". Nucleic Acids Research. 39 (Database issue): D497–506. doi:10.1093/nar/gkq1115. PMC 3013706. PMID 21075795.

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