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Parabacteroides-1 RNA motif

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Find sources: "Parabacteroides-1 RNA motif" – news · newspapers · books · scholar · JSTOR (November 2021) (Learn how and when to remove this message)
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RNA family
Parabacteroides-1
Consensus secondary structure and sequence conservation of Parabacteroides-1 RNA
Identifiers
SymbolParabacteroides-1
RfamRF03088
Other data
RNA typeGene; sRNA
SOSO:0001263
PDB structuresPDBe

The Parabacteroides-1 RNA motif is a conserved RNA structure that was discovered by bioinformatics. Energetically stable tetraloops often occur in this motif. Parabacteroides-1 motif RNAs are found in Parabacteroides.

Parabacteroides-1 RNAs likely function in trans as small RNAs, and are immediately followed by a predicted Rho-independent transcription terminator hairpin. Based on the protein-coding genes that are nearby to Parabacteroides-1 RNAs, it is likely that at least some of these RNAs are located in prophage region.

References

  1. Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR (October 2017). "Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions". Nucleic Acids Research. 45 (18): 10811–10823. doi:10.1093/nar/gkx699. PMC 5737381. PMID 28977401.
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Parabacteroides-1 RNA motif Add topic