Vimentin 3′ UTR protein-binding region | |
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Predicted secondary structure and sequence conservation of Vimentin3 | |
Identifiers | |
Symbol | Vimentin3 |
Rfam | RF00109 |
Other data | |
RNA type | Cis-reg |
Domain(s) | Eukaryota |
SO | SO:0000205 |
PDB structures | PDBe |
The vimentin 3′ UTR protein-binding region is an RNA element that contains a Y-shaped structure which has been shown to have protein-binding activity. The same region has been implicated in the control of mRNA localisation to the perinuclear region of the cytoplasm, possibly at sites of intermediate filament assembly. The identity of the proteins involved and the localisation mechanism are not known.
References
- Zehner ZE, Shepherd RK, Gabryszuk J, Fu TF, Al-Ali M, Holmes WM (August 1997). "RNA-protein interactions within the 3 ' untranslated region of vimentin mRNA". Nucleic Acids Research. 25 (16): 3362–3370. doi:10.1093/nar/25.16.3362. PMC 146884. PMID 9241253.
- Bermano G, Shepherd RK, Zehner ZE, Hesketh JE (May 2001). "Perinuclear mRNA localisation by vimentin 3′-untranslated region requires a 100 nucleotide sequence and intermediate filaments". FEBS Letters. 497 (2–3): 77–81. doi:10.1016/S0014-5793(01)02438-3. PMID 11377416. S2CID 26094181.
External links
- Page for Vimentin 3′ UTR protein-binding region at Rfam
- Transterm page for Vimentin Localisation Element
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