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| Many variations of condensation reactions exist. Common examples include the ] and the ], which both form water as a by-product, as well as the ] and the ] (intramolecular Claisen condensation), which form alcohols as by-products.<ref name=":0">{{cite book|title=Advanced Organic Chemistry|url=https://archive.org/details/advancedorganicc00bruc|url-access=limited|last1=Bruckner|first1=Reinhard|date=2002|publisher=Harcourt Academic Press|isbn=0-12-138110-2|edition=First|location=San Diego, California|pages=–427}}</ref> | Many variations of condensation reactions exist. Common examples include the ] and the ], which both form water as a by-product, as well as the ] and the ] (intramolecular Claisen condensation), which form alcohols as by-products.<ref name=":0">{{cite book|title=Advanced Organic Chemistry|url=https://archive.org/details/advancedorganicc00bruc|url-access=limited|last1=Bruckner|first1=Reinhard|date=2002|publisher=Harcourt Academic Press|isbn=0-12-138110-2|edition=First|location=San Diego, California|pages=–427}}</ref> | ||
| ] | |||
| == Synthesis of prebiotic molecules == | == Synthesis of prebiotic molecules == | ||
| {{main|Abiogenesis}} | |||
| Condensation reactions likely played major roles in the synthesis of the first biotic molecules including early ] and ] |
Condensation reactions likely played major roles in the synthesis of the first biotic molecules including early ]s and ]s. In fact, condensation reactions would be required at multiple steps in ] oligomerization: the condensation of ]s and ]s, ] ], and ] polymerization.<ref name=":02">{{Cite book |last=Fiore |first=Michele |title=Prebiotic Chemistry and Life's Origin |publisher=Royal Society of Chemistry |year=2022 |isbn=9781839164804 |location=United Kingdom |pages=124–144}}</ref> | ||
| <chem>2 Glycine <=> diglycine + H2O | |||
| </chem> | |||
| <chem>Adenosine + HPO4^2- <=> AMP^2- + H2 O | |||
| </chem> | |||
| At room temperature and neutral pH, the thermodynamic requirement for aqueous peptide synthesis (first equation above) is 3.5 kcal/mol<ref>{{Cite journal |last=Johnson |first=James W. |last2=Oelkers |first2=Eric H. |last3=Helgeson |first3=Harold C. |date=1992 |title=SUPCRT92: A software package for calculating the standard molal thermodynamic properties of minerals, gases, aqueous species, and reactions from 1 to 5000 bar and 0 to 1000°C |url=http://dx.doi.org/10.1016/0098-3004(92)90029-q |journal=Computers & Geosciences |volume=18 |issue=7 |pages=899–947 |doi=10.1016/0098-3004(92)90029-q |issn=0098-3004}}</ref><ref name=":1">{{Cite journal |last=Ross |first=David |last2=Deamer |first2=David |date=2019 |title=Prebiotic Oligomer Assembly: What Was the Energy Source? |url=http://dx.doi.org/10.1089/ast.2018.1918 |journal=Astrobiology |volume=19 |issue=4 |pages=517–521 |doi=10.1089/ast.2018.1918 |issn=1531-1074}}</ref>; the energy needed to synthesize adenosine monophosphate (second equation) is 2.7 kcal/mol.<ref>{{Cite journal |last=LaRowe |first=Douglas E. |last2=Helgeson |first2=Harold C. |date=2006 |title=Biomolecules in hydrothermal systems: Calculation of the standard molal thermodynamic properties of nucleic-acid bases, nucleosides, and nucleotides at elevated temperatures and pressures |url=http://dx.doi.org/10.1016/j.gca.2006.04.010 |journal=Geochimica et Cosmochimica Acta |volume=70 |issue=18 |pages=4680–4724 |doi=10.1016/j.gca.2006.04.010 |issn=0016-7037}}</ref><ref name=":1" /> | |||
| '''Plausible condensing agents for early life''' | |||
| Fortunately, both carbon-nitrogen based and phosphorus based condensing agents would likely have been available in prebiotic environments to facilitate the bonds formed in these reactions.<ref name=":02" /> These condensing agents include cyanamide, dicyandiamide, and urea. Cyanamide is likely to have been generated through the production of limestone in a prebiotic environment, and easily forms its dimer, dicyandiamide and under mild conditions, in the presence of phosphate salt, can hydrolyze to urea.<ref>{{Cite journal |last=Fiore |first=Michele |last2=Strazewski |first2=Peter |date=2016 |title=Prebiotic Lipidic Amphiphiles and Condensing Agents on the Early Earth |url=http://dx.doi.org/10.3390/life6020017 |journal=Life |volume=6 |issue=2 |pages=17 |doi=10.3390/life6020017 |issn=2075-1729}}</ref> In addition to serving as a precursor for important biomolecules (purines, pyrimidines, and nucleotide precursors), it can serve as a condensing agent for various condensation reactions relevant to the ], including dipeptides and nucleotides. | |||
| Condensed phosphates may also serve as condensing agents in prebiotic synthesis reactions. | |||
| ==See also== | ==See also== | ||
| *] | * ] | ||
| *], the opposite of a condensation reaction | * ], the opposite of a condensation reaction | ||
| *]s | * ]s | ||
| ==References== | ==References== | ||
| {{Reflist}} | {{Reflist}} | ||
| {{Authority control}} | |||
| ] | ] | ||
Latest revision as of 17:03, 23 December 2024
Chemical reaction in which two molecules are combined and a small molecule, usually water, is lostIn organic chemistry, a condensation reaction is a type of chemical reaction in which two molecules are combined to form a single molecule, usually with the loss of a small molecule such as water. If water is lost, the reaction is also known as a dehydration synthesis. However other molecules can also be lost, such as ammonia, ethanol, acetic acid and hydrogen sulfide.
The addition of the two molecules typically proceeds in a step-wise fashion to the addition product, usually in equilibrium, and with loss of a water molecule (hence the name condensation). The reaction may otherwise involve the functional groups of the molecule, and is a versatile class of reactions that can occur in acidic or basic conditions or in the presence of a catalyst. This class of reactions is a vital part of life as it is essential to the formation of peptide bonds between amino acids and to the biosynthesis of fatty acids.
Many variations of condensation reactions exist. Common examples include the aldol condensation and the Knoevenagel condensation, which both form water as a by-product, as well as the Claisen condensation and the Dieckman condensation (intramolecular Claisen condensation), which form alcohols as by-products.
Synthesis of prebiotic molecules
Main article: AbiogenesisCondensation reactions likely played major roles in the synthesis of the first biotic molecules including early peptides and nucleic acids. In fact, condensation reactions would be required at multiple steps in RNA oligomerization: the condensation of nucleobases and sugars, nucleoside phosphorylation, and nucleotide polymerization.
See also
- Anabolism
- Hydrolysis, the opposite of a condensation reaction
- Condensed tannins
References
- "25.18 Condensation Reactions". Book: Introductory Chemistry (CK-12). Chemistry Libre Texts. 12 August 2020. Retrieved 9 January 2021.
- "Condensation Reaction". IUPAC Compendium of Chemical Terminology (Gold Book). IUPAC. 2014. doi:10.1351/goldbook.C01238. Retrieved 7 December 2017.
- Fakirov, S. (2019-02-01). "Condensation Polymers: Their Chemical Peculiarities Offer Great Opportunities". Progress in Polymer Science. 89: 1–18. doi:10.1016/j.progpolymsci.2018.09.003. ISSN 0079-6700. S2CID 105101288.
- Voet, Donald; Voet, Judith; Pratt, Chriss (2008). Fundamentals of Biochemistry. Hoboken, NJ: John Wiley & Sons, Inc. pp. 88. ISBN 978-0470-12930-2.
- Bruckner, Reinhard (2002). Advanced Organic Chemistry (First ed.). San Diego, California: Harcourt Academic Press. pp. 414–427. ISBN 0-12-138110-2.
- Fiore, Michele (2022). Prebiotic Chemistry and Life's Origin. United Kingdom: Royal Society of Chemistry. pp. 124–144. ISBN 9781839164804.