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== Biochemical dimers == == Biochemical dimers ==
] are formed by a ] from pyrimidine ]s. This cross-linking causes ]s which can be ], causing ]s.<ref>{{Citation |last=Kuzminov |first=A. |title=Pyrimidine Dimers |date=2013-01-01 |url=https://www.sciencedirect.com/science/article/pii/B9780123749840012444 |work=Brenner's Encyclopedia of Genetics (Second Edition) |pages=538–539 |editor-last=Maloy |editor-first=Stanley |place=San Diego |publisher=Academic Press |language=en |isbn=978-0-08-096156-9 |access-date=2022-10-10 |editor2-last=Hughes |editor2-first=Kelly}}</ref> ] are formed by a ] from pyrimidine ]s. This cross-linking causes ]s which can be ], causing ]s.<ref>{{Citation |last=Kuzminov |first=A. |title=Pyrimidine Dimers |date=2013-01-01 |url=https://www.sciencedirect.com/science/article/pii/B9780123749840012444 |work=Brenner's Encyclopedia of Genetics (Second Edition) |pages=538–539 |editor-last=Maloy |editor-first=Stanley |place=San Diego |publisher=Academic Press |language=en |isbn=978-0-08-096156-9 |access-date=2022-10-10 |editor2-last=Hughes |editor2-first=Kelly}}</ref>

==== G protein-coupled Receptors ====
As the largest and most diverse family of receptors within the human genome, ] (GPCR) have been studied extensively, with recent studies supporting their ability to form dimers.<ref>{{Citation |last=Faron-Górecka |first=Agata |title=Chapter 10 - Understanding GPCR dimerization |date=2019-01-01 |url=https://www.sciencedirect.com/science/article/pii/S0091679X18301080 |work=Methods in Cell Biology |volume=149 |pages=155–178 |editor-last=Shukla |editor-first=Arun K. |series=G Protein-Coupled Receptors, Part B |publisher=Academic Press |language=en |doi=10.1016/bs.mcb.2018.08.005 |access-date=2022-10-27 |last2=Szlachta |first2=Marta |last3=Kolasa |first3=Magdalena |last4=Solich |first4=Joanna |last5=Górecki |first5=Andrzej |last6=Kuśmider |first6=Maciej |last7=Żurawek |first7=Dariusz |last8=Dziedzicka-Wasylewska |first8=Marta}}</ref> These dimers are not only restricted to homodimers, but also heterodimers with related members of the GPCR family.<ref>{{Cite journal |last=Rios |first=C. D. |last2=Jordan |first2=B. A. |last3=Gomes |first3=I. |last4=Devi |first4=L. A. |date=2001-11-01 |title=G-protein-coupled receptor dimerization: modulation of receptor function |url=https://www.sciencedirect.com/science/article/pii/S0163725801001607 |journal=Pharmacology & Therapeutics |language=en |volume=92 |issue=2 |pages=71–87 |doi=10.1016/S0163-7258(01)00160-7 |issn=0163-7258}}</ref> While not all, some GPCRs require dimerization to function, such as GABA<sub>B</sub>-receptor, emphasizing the importance of dimers in biological systems.<ref>{{Cite journal |last=Lohse |first=Martin J |date=2010-02-01 |title=Dimerization in GPCR mobility and signaling |url=https://www.sciencedirect.com/science/article/pii/S1471489209001672 |journal=Current Opinion in Pharmacology |series=GPCR |language=en |volume=10 |issue=1 |pages=53–58 |doi=10.1016/j.coph.2009.10.007 |issn=1471-4892}}</ref>


==== Receptor Tyrosine Kinase ==== ==== Receptor Tyrosine Kinase ====

Revision as of 05:04, 14 November 2022

Oligomer consisting of two monomers joined by bonds of any kind
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Dimers of carboxylic acids are often found in vapour phase.

A dimer (/ˈdaɪmər/) (di-, "two" + -mer, "parts") is an oligomer consisting of two monomers joined by bonds that can be either strong or weak, covalent or intermolecular. Examples of dimers include inorganic and biochemical dimers.

The term homodimer is used when the two molecules are identical (e.g. A–A) and heterodimer when they are not (e.g. A–B). The reverse of dimerisation is often called dissociation. When two oppositely charged ions associate into dimers, they are referred to as Bjerrum pairs, after Niels Bjerrum.

Noncovalent dimers

Carboxylic acids form dimers by hydrogen bonding of the acidic hydrogen and the carbonyl oxygen when anhydrous. For example, acetic acid forms a dimer in the gas phase, where the monomer units are held together by hydrogen bonds. Under special conditions, most OH-containing molecules form dimers, e.g. the water dimer.

Excimers and exciplexes are excited structures with a short lifetime. For example, noble gases do not form stable dimers, but they (dimers) do form the excimers Ar2*, Kr2* and Xe2* under high pressure and electrical stimulation.

Covalent dimers

The dimer of cyclopentadiene although this might not be readily apparent on initial inspection
1,2-dioxetane, one of two formaldehyde dimers. As evidenced by this molecule's bonds, covalent dimers are usually not similar in structure to their monomers.

Molecular dimers are often formed by the reaction of two identical compounds e.g.: 2A → A−A. In this example, monomer "A" is said to dimerise to give the dimer "A−A". An example is a diaminocarbene, which dimerise to give a tetraaminoethylene:

2 C ( NR 2 ) 2 ( R 2 N ) 2 C = C ( NR 2 ) 2 {\displaystyle {\ce {2 C(NR2)2 -> (R2N)2C=C(NR2)2}}}

Carbenes are highly reactive and readily form bonds.

Dicyclopentadiene is an asymmetrical dimer of two cyclopentadiene molecules that have reacted in a Diels-Alder reaction to give the product. Upon heating, it "cracks" (undergoes a retro-Diels-Alder reaction) to give identical monomers:

C 10 H 12 2 C 5 H 6 {\displaystyle {\ce {C10H12 -> 2 C5H6}}}

Many nonmetallic elements occur as dimers: hydrogen, nitrogen, oxygen, the halogens, i.e. fluorine, chlorine, bromine and iodine. Noble gases can form dimers linked by van der Waals bonds, for example dihelium or diargon. Mercury occurs as a mercury(I) cation (Hg2+2), formally a dimeric ion. Other metals may form a proportion of dimers in their vapour. Known metallic dimers include dilithium (Li2), disodium (Na2), dipotassium (K2), dirubidium (Rb2) and dicaesium (Cs2).

Such elemental dimers are homonuclear diatomic molecules.

Many small organic molecules, most notably formaldehyde, easily form dimers. The dimer of formaldehyde (CH2O) is dioxetane (C2H4O2).

Borane (BH3) occurs as the dimer diborane (B2H6), due to the high Lewis acidity of the boron center.

Polymer chemistry

In the context of polymers, "dimer" also refers to the degree of polymerization 2, regardless of the stoichiometry or condensation reactions.

One case where this is applicable is with disaccharides. For example, cellobiose is a dimer of glucose, even though the formation reaction produces water:

2 C 6 H 12 O 6 C 12 H 22 O 11 + H 2 O {\displaystyle {\ce {2 C6H12O6 -> C12H22O11 + H2O}}}

Here, the resulting dimer has a stoichiometry different from the initial pair of monomers.

Amino acids can also form dimers, which are called dipeptides. An example is glycylglycine, consisting of two glycine molecules joined by a peptide bond. Other examples include aspartame and carnosine.

Biochemical dimers

Pyrimidine dimers are formed by a photochemical reaction from pyrimidine DNA bases. This cross-linking causes DNA mutations which can be carcinogenic, causing skin cancers.

G protein-coupled Receptors

As the largest and most diverse family of receptors within the human genome, G protein-coupled receptors (GPCR) have been studied extensively, with recent studies supporting their ability to form dimers. These dimers are not only restricted to homodimers, but also heterodimers with related members of the GPCR family. While not all, some GPCRs require dimerization to function, such as GABAB-receptor, emphasizing the importance of dimers in biological systems.

Receptor Tyrosine Kinase

Receptor Tyrosine Kinase Dimerization

Much like G protein-coupled receptor, receptor tyrosine kinases (RTK) are also essential proteins in mammals that take the form of dimers to perform their function in signal transduction, affecting a number of different cellular processes. RTKs typically exist as monomers, but undergo a conformational change upon ligand binding, allowing them to dimerize with nearby RTKs. The dimerization activates the cytoplasmic kinase domains that are responsible for further signal transduction.

See also

References

  1. "Dimer". Illustrated Glossary of Organic Chemistry. UCLA. Retrieved 12 May 2022.
  2. Adar, Ram M.; Markovich, Tomer; Andelman, David (2017-05-17). "Bjerrum pairs in ionic solutions: A Poisson-Boltzmann approach". The Journal of Chemical Physics. 146 (19): 194904. arXiv:1702.04853. Bibcode:2017JChPh.146s4904A. doi:10.1063/1.4982885. ISSN 0021-9606. PMID 28527430. S2CID 12227786.
  3. Kuzminov, A. (2013-01-01), Maloy, Stanley; Hughes, Kelly (eds.), "Pyrimidine Dimers", Brenner's Encyclopedia of Genetics (Second Edition), San Diego: Academic Press, pp. 538–539, ISBN 978-0-08-096156-9, retrieved 2022-10-10
  4. Faron-Górecka, Agata; Szlachta, Marta; Kolasa, Magdalena; Solich, Joanna; Górecki, Andrzej; Kuśmider, Maciej; Żurawek, Dariusz; Dziedzicka-Wasylewska, Marta (2019-01-01), Shukla, Arun K. (ed.), "Chapter 10 - Understanding GPCR dimerization", Methods in Cell Biology, G Protein-Coupled Receptors, Part B, vol. 149, Academic Press, pp. 155–178, doi:10.1016/bs.mcb.2018.08.005, retrieved 2022-10-27
  5. Rios, C. D.; Jordan, B. A.; Gomes, I.; Devi, L. A. (2001-11-01). "G-protein-coupled receptor dimerization: modulation of receptor function". Pharmacology & Therapeutics. 92 (2): 71–87. doi:10.1016/S0163-7258(01)00160-7. ISSN 0163-7258.
  6. Lohse, Martin J (2010-02-01). "Dimerization in GPCR mobility and signaling". Current Opinion in Pharmacology. GPCR. 10 (1): 53–58. doi:10.1016/j.coph.2009.10.007. ISSN 1471-4892.
  7. ^ Hubbard, Stevan R (1999-04-01). "Structural analysis of receptor tyrosine kinases". Progress in Biophysics and Molecular Biology. 71 (3): 343–358. doi:10.1016/S0079-6107(98)00047-9. ISSN 0079-6107.
  8. Lemmon, Mark A.; Schlessinger, Joseph (2010-06-25). "Cell Signaling by Receptor Tyrosine Kinases". Cell. 141 (7): 1117–1134. doi:10.1016/j.cell.2010.06.011. ISSN 0092-8674. PMC 2914105. PMID 20602996.{{cite journal}}: CS1 maint: PMC format (link)
  9. Lemmon, Mark A.; Schlessinger, Joseph; Ferguson, Kathryn M. (2014-04-01). "The EGFR Family: Not So Prototypical Receptor Tyrosine Kinases". Cold Spring Harbor Perspectives in Biology. 6 (4): a020768. doi:10.1101/cshperspect.a020768. ISSN 1943-0264. PMID 24691965.
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