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Chlorophyllide

Chlorophyllide a
Names
IUPAC name Magnesium (3S,4S,21R)-3-(2-carboxyethyl)-14-ethyl-21-(methoxycarbonyl)-4,8,13,18-tetramethyl-20-oxo-9-vinyl-23,25-didehydrophorbine-23,25-diide
Identifiers
Compounds a: Chlorophyllide a b: Chlorophyllide b
CAS Number	a: 14897-06-4 b: 14428-12-7
3D model (JSmol)	a: Interactive image
ChEBI	a: CHEBI:16900 b: CHEBI:38209
ChemSpider	a: 388735 b: 34999243
PubChem CID	a: 439664 b: 15775275
InChI a: InChI=1S/C35H36N4O5.Mg/c1-8-19-15(3)22-12-24-17(5)21(10-11-28(40)41)32(38-24)30-31(35(43)44-7)34(42)29-18(6)25(39-33(29)30)14-27-20(9-2)16(4)23(37-27)13-26(19)36-22;/h8,12-14,17,21,31H,1,9-11H2,2-7H3,(H3,36,37,38,39,40,41,42);/q;+2/p-2/t17-,21-,31+;/m0./s1Key: ANWUQYTXRXCEMZ-NYABAGMLSA-L b: InChI=1S/C35H34N4O6.Mg/c1-7-18-15(3)22-11-23-16(4)20(9-10-28(41)42)32(38-23)30-31(35(44)45-6)34(43)29-17(5)24(39-33(29)30)12-26-19(8-2)21(14-40)27(37-26)13-25(18)36-22;/h7,11-14,16,20,31H,1,8-10H2,2-6H3,(H3,36,37,38,39,40,41,42,43);/q;+2/p-2/t16-,20-,31+;/m0./s1Key: QPDWBRHRBKXUNS-IEEIVXFASA-L
SMILES a: CCC1=C(C)C2=Cc3c(C=C)c(C)c4C=C5(C)(CCC(O)=O)C6=55(n34)n3c(=CC1=25)c(C)c1C(=O)(C(=O)OC)C6=c31
Properties
Chemical formula	C35H34MgN4O5
Molar mass	614.973 g/mol
Except where otherwise noted, data are given for materials in their standard state (at 25 °C , 100 kPa). Infobox references

Chlorophyllide a and chlorophyllide b are the biosynthetic precursors of chlorophyll a and chlorophyll b respectively. Their propionic acid groups are converted to phytyl esters by the enzyme chlorophyll synthase in the final step of the pathway. Thus the main interest in these chemical compounds has been in the study of chlorophyll biosynthesis in plants, algae and cyanobacteria. Chlorophyllide a is also an intermediate in the biosynthesis of bacteriochlorophylls.

Structures

Chlorophyllide a, is a carboxylic acid (R=H). In chlorophyllide b, the methyl group at position 13 (IUPAC numbering for chlorophyllide a) and highlighted in the green box, is replaced with a formyl group.

Biosynthesis steps up to formation of protoporphyrin IX

In the early steps of the biosynthesis, which starts from glutamic acid, a tetrapyrrole is created by the enzymes deaminase and cosynthetase which transform aminolevulinic acid via porphobilinogen and hydroxymethylbilane to uroporphyrinogen III. The latter is the first macrocyclic intermediate common to haem, sirohaem, cofactor F₄₃₀, cobalamin and chlorophyll itself. The next intermediates are coproporphyrinogen III and protoporphyrinogen IX, which is oxidised to the fully aromatic protoporphyrin IX. Insertion of iron into protoporphyrin IX in for example mammals gives haem, the oxygen-carrying cofactor in blood, but plants combine magnesium instead to give, after further transformations, chlorophyll for photosynthesis.

Biosynthesis of chlorophyllides from protoporphyrin IX

Details of the late stages of the biosynthetic pathway to chlorophyll differ in the plants (for example Arabidopsis thaliana, Nicotiana tabacum and Triticum aestivum) and bacteria (for example Rubrivivax gelatinosus and Synechocystis) in which it has been studied. However, although the genes and enzymes vary, the chemical reactions involved are identical.

Insertion of magnesium

Chlorophyll is characterised by having a magnesium ion coordinated within a ligand called a chlorin. The metal is inserted into protoporphyrin IX by the enzyme magnesium chelatase which catalyzes the reaction EC 6.6.1.1

protoporphyrin IX + Mg
+ ATP + H
₂O ${\displaystyle \rightleftharpoons }$ ADP + phosphate + Mg-protoporphyrin IX + 2 H

Esterification of the ring C propionate group

The next step towards the chlorophyllides is the formation of a methyl (CH₃) ester on one of the propionate groups, which is catalysed by the enzyme magnesium protoporphyrin IX methyltransferase in the methylation reaction EC 2.1.1.11

Mg-protoporphyrin IX + S-adenosylmethionine ${\displaystyle \rightleftharpoons }$ Mg-protoporphyrin IX 13-methyl ester + S-adenosyl-L-homocysteine

From porphyrin to chlorin

The chlorin ring system features a five-membered carbon ring E is created when one of the propionate groups of the porphyrin is cyclised to the carbon atom linking the original pyrrole rings C and D. A series of chemical steps catalysed by the enzyme Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase gives the overall reaction EC 1.14.13.81

Mg-protoporphyrin IX 13-monomethyl ester + 3 NADPH + 3 H + 3 O₂ ${\displaystyle \rightleftharpoons }$ divinylprotochlorophyllide + 3 NADP + 5 H₂O

In barley the electrons are provided by reduced ferredoxin, which can obtain them from photosystem I or, in the dark, from Ferredoxin—NADP(+) reductase: the cyclase protein is named XanL and is encoded by the Xantha-l gene. In anaerobic organisms such as Rhodobacter sphaeroides the same overall transformation occurs but the oxygen incorporated into magnesium-protoporphyrin IX 13-monomethyl ester comes from water in the reaction EC 1.21.98.3.

Reduction steps to chlorophyllide a

Two further transformations are required to produce chlorophyllide a. Both are reduction reactions: one converts a vinyl group to an ethyl group and the second adds two atoms of hydrogen to the pyrrole ring D, although the overall aromaticity of the macrocycle is retained. These reactions proceed independently and in some organisms the sequence is reversed. The enzyme divinyl chlorophyllide a 8-vinyl-reductase converts 3,8-divinylprotochlorophyllide to protochlorophyllide in reaction EC 1.3.1.75

3,8-divinylprotochlorophyllide + NADPH + H ${\displaystyle \rightleftharpoons }$ protochlorophyllide + NADP

This is followed by the reaction EC 1.3.1.33 in which the pyrrole ring D is reduced by the enzyme protochlorophyllide reductase

protochlorophyllide + NADPH + H ${\displaystyle \rightleftharpoons }$ chlorophyllide a + NADP

This reaction is light-dependent but there is an alternative enzyme, ferredoxin:protochlorophyllide reductase (ATP-dependent), that uses reduced ferredoxin as its cofactor and is not dependent on light; it performs the a similar reaction EC 1.3.7.7 but with the alternative substrate 3,8-divinylprotochlorophyllide

3,8-divinylprotochlorophyllide + reduced ferredoxin + 2 ATP + 2 H₂O ${\displaystyle \rightleftharpoons }$ 3,8-divinylchlorophyllide a + oxidized ferredoxin + 2 ADP + 2 phosphate

In the organisms which use this alternative sequence of reduction steps, the process is completed by the reaction EC 1.3.7.13 catalysed by an enzyme which can take a variety of substrates and perform the required vinyl-group reduction, for example in this case

3,8-divinylchlorophyllide a + 2 reduced ferredoxin + 2 H ${\displaystyle \rightleftharpoons }$ chlorophyllide a + 2 oxidized ferredoxin

From chlorophyllide a to chlorophyllide b

Chlorophyllide a oxygenase is the enzyme that converts chlorophyllide a to chlorophyllide b by catalysing the overall reaction EC 1.3.7.13

chlorophyllide a + 2 O₂ + 2 NADPH + 2 H ${\displaystyle \rightleftharpoons }$ chlorophyllide b + 3 H₂O + 2 NADP

Use in the biosynthesis of chlorophylls

Chlorophyll synthase completes the biosynthesis of chlorophyll a by catalysing the reaction EC 2.5.1.62

chlorophyllide a + phytyl diphosphate ${\displaystyle \rightleftharpoons }$ chlorophyll a + diphosphate

This forms an ester of the carboxylic acid group in chlorophyllide a with the 20-carbon diterpene alcohol phytol. Chlorophyll b is made by the same enzyme acting on chlorophyllide b. The same is known for chlorophyll d and f, both made from corresponding chlorophyllides ultimately made from chlorophyllide a.

Use in the biosynthesis of bacteriochlorophylls

Bacteriochlorophylls are the light harvesting pigments found in photosynthetic bacteria: they do not produce oxygen as a side-product. There are many such structures but all are biosynthetically related by being derived from chlorophyllide a.

BChl a: bacteriochlorin ring and sidechains

Bacteriochlorophyll a is a typical example; its biosynthesis has been studied in Rhodobacter capsulatus and Rhodobacter sphaeroides. The first step is the reduction (with trans stereochemistry) of the pyrrole ring B, giving the characteristic 18-electron aromatic system of many bacteriochlorophylls. This is carried out by the enzyme chlorophyllide a reductase, which catalyses the reaction EC 1.3.7.15.

chlorophyllide a + 2 reduced ferredoxin + ATP + H₂O + 2 H ${\displaystyle \rightleftharpoons }$ 3-deacetyl 3-vinylbacteriochlorophyllide a + 2 oxidized ferredoxin + ADP + phosphate

The next two steps convert the vinyl group first into a 1-hydroxyethyl group and then into the acetyl group of bacteriochlorophyllide a. The reactions are catalysed by chlorophyllide a 3-hydratase (EC 4.2.1.165) and bacteriochlorophyllide a dehydrogenase (EC 1.1.1.396) as follows:

3-deacetyl 3-vinylbacteriochlorophyllide a + H₂O ${\displaystyle \rightleftharpoons }$ 3-deacetyl 3-(1-hydroxyethyl)bacteriochlorophyllide a

3-deacetyl 3-(1-hydroxyethyl)bacteriochlorophyllide a + NAD ${\displaystyle \rightleftharpoons }$ bacteriochlorophyllide a + NADH + H

These three enzyme-catalysed reactions can occur in different sequences to produce bacteriochlorophyllide a ready for esterification to the final pigments for photosynthesis. The phytyl ester of bacteriochlorophyll a is not attached directly: rather, the initial intermediate is the ester with R=geranylgeranyl (from geranylgeranyl pyrophosphate) which is then subject to additional steps as three of the sidechain's alkene bonds are reduced.

References

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• Tetrapyrroles
• Photosynthetic pigments