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FAT1
Identifiers
Aliases	FAT1, CDHF7, CDHR8, FAT, ME5, hFat1, FAT atypical cadherin 1
External IDs	OMIM: 600976; MGI: 109168; HomoloGene: 66302; GeneCards: FAT1; OMA:FAT1 - orthologs
Gene location (Human) Chr. Chromosome 4 (human) Band 4q35.2 Start 186,587,794 bp End 186,726,722 bp
Gene location (Mouse) Chr. Chromosome 8 (mouse) Band 8 B1.1|8 24.81 cM Start 45,388,484 bp End 45,505,294 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in Epithelium of choroid plexus tibia metanephric glomerulus periodontal fiber ventricular zone cartilage tissue stromal cell of endometrium jejunal mucosa mucosa of colon mucosa of sigmoid colon Top expressed in hand ciliary body stroma of bone marrow iris molar cumulus cell medullary collecting duct calvaria renal corpuscle conjunctival fornix More reference expression data BioGPS More reference expression data
Gene ontology Molecular function calcium ion binding protein binding Cellular component cytoplasm integral component of membrane membrane cell-cell junction focal adhesion filopodium plasma membrane integral component of plasma membrane cell junction perinuclear region of cytoplasm extracellular exosome nucleus lamellipodium apical plasma membrane Biological process actin filament organization cell-cell signaling anatomical structure morphogenesis establishment or maintenance of cell polarity cell adhesion cell migration homophilic cell adhesion via plasma membrane adhesion molecules cell-cell adhesion epithelial cell morphogenesis establishment or maintenance of epithelial cell apical/basal polarity camera-type eye morphogenesis Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 2195 14107 Ensembl ENSG00000083857 ENSMUSG00000070047 UniProt Q14517 n/a RefSeq (mRNA) NM_005245 NM_001081286 NM_010179 RefSeq (protein) NP_005236 n/a Location (UCSC) Chr 4: 186.59 – 186.73 Mb Chr 8: 45.39 – 45.51 Mb PubMed search
Wikidata
View/Edit Human View/Edit Mouse

Protocadherin FAT1 is a protein that in humans is encoded by the FAT1 gene.

Function

This gene is an ortholog of the Drosophila fat gene, which encodes a tumor suppressor essential for controlling cell proliferation during Drosophila development. The gene product is a member of the cadherin superfamily, a group of integral membrane proteins characterized by the presence of cadherin-type repeats. This gene is expressed at high levels in a number of fetal epithelia. Transcript variants derived from alternative splicing and/or alternative promoter usage exist, but they have not been fully described.

The murine Fat1 knockout mouse is not embryonically lethal but pups die within 48-hours due to the abnormal fusion of podocyte foot processes within the kidney. These Fat1 knockout mice also showed partially penetrant but often severe midline defects including holoprosencephaly, microphthalmia-anophthalmia and in rare cases cyclopia.

It has been shown that the EVH motifs in the cytoplasmic tail of mouse Fat1 interact with Ena/VASP and ablation of Fat1 by RNAi leads to decreased cell migration of rat epithelial cells

The cytoplasmic tail of Fat1 has also been shown to bind the transcriptional repressor Atrophin in rat vascular smooth muscle cells

At the carboxyl terminus of FAT1 lies a PDZ domain (PSD95/Dlg1/ZO-1) ligand motif (-HTEV). Zebrafish Fat1 was found to bind the protein scribble and regulate Hippo signalling

Using the human SHSY5Y cell line as a model of neuronal differentiation, human FAT1 was shown to regulate Hippo kinase components with loss of FAT1 leading to nucleocytoplasmic relocation of TAZ and enhanced transcription of the Hippo target gene CTGF. The same study also showed FAT1 was able to regulate TGF-beta signaling

FAT1 has been found to bind beta-catenin and regulate Wnt-signaling in colorectal cancer.

Human FAT1 was found to bind glypican-3 (GPC3) and regulate cell migration in liver cancer cells.

Structure

The human FAT1 cadherin gene was cloned in 1995 from a human T-leukemia (T-ALL) cell line and consists of 27 exons located on chromosome 4q34–35. Structurally the FAT1 protein is a single pass transmembrane protein with the extracellular portion consisting of 34 cadherin repeats, 5 EGF-like domains and a laminin-G like domain.

The FAT1 protein once translated undergoes furin mediated S1 cleavage forming a non-covalent heterodimer before achieving cell surface expression although this processing is often perturbed in cancer cells which express non-cleaved FAT1 on the cell surface.

FAT1 cadherin is multiply phosphorylated on its ectodomain but phosphorylation is not catalysed by FJX1. The ectodomain of FAT1 can also be shed from the cell surface by the sheddase ADAM10, with release of this ectodomain a possible new biomarker in pancreatic cancer.

FAT1 has also been found to undergo alternative splicing in breast cancer cells undergoing epithelial-to-mesenchymal (EMT) transition with the addition of 12 amino acids in the cytoplasmic tail. Similar splice variants have also been described for murine Fat1 where alternative splicing of the cytoplasmic tail regulated cell migration.

Clinical significance

Cancer

The FAT1 cadherin has been ascribed both as putative tumour suppressor or oncogene in different contexts. Loss of heterozygosity for FAT1 has been reported in primary oral carcinomas and astrocytic tumours. There are also reports of over expression of FAT1 in different cancers including DCIS breast cancer, melanoma, and leukaemia.

References

1. ^ GRCh38: Ensembl release 89: ENSG00000083857 – Ensembl, May 2017
2. ^ GRCm38: Ensembl release 89: ENSMUSG00000070047 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. ^ Dunne J, Hanby AM, Poulsom R, Jones TA, Sheer D, Chin WG, et al. (November 1995). "Molecular cloning and tissue expression of FAT, the human homologue of the Drosophila fat gene that is located on chromosome 4q34-q35 and encodes a putative adhesion molecule". Genomics. 30 (2): 207–23. doi:10.1006/geno.1995.9884. PMID 8586420.
6. ^ "Entrez Gene: FAT FAT tumor suppressor homolog 1 (Drosophila)".
7. Ciani L, Patel A, Allen ND, ffrench-Constant C (May 2003). "Mice lacking the giant protocadherin mFAT1 exhibit renal slit junction abnormalities and a partially penetrant cyclopia and anophthalmia phenotype". Molecular and Cellular Biology. 23 (10): 3575–82. doi:10.1128/mcb.23.10.3575-3582.2003. PMC 164754. PMID 12724416.
8. Moeller MJ, Soofi A, Braun GS, Li X, Watzl C, Kriz W, Holzman LB (October 2004). "Protocadherin FAT1 binds Ena/VASP proteins and is necessary for actin dynamics and cell polarization". The EMBO Journal. 23 (19): 3769–79. doi:10.1038/sj.emboj.7600380. PMC 522787. PMID 15343270.
9. Hou R, Sibinga NE (March 2009). "Atrophin proteins interact with the Fat1 cadherin and regulate migration and orientation in vascular smooth muscle cells". The Journal of Biological Chemistry. 284 (11): 6955–65. doi:10.1074/jbc.M809333200. PMC 2652288. PMID 19131340.
10. Skouloudaki K, Puetz M, Simons M, Courbard JR, Boehlke C, Hartleben B, et al. (May 2009). "Scribble participates in Hippo signaling and is required for normal zebrafish pronephros development". Proceedings of the National Academy of Sciences of the United States of America. 106 (21): 8579–84. Bibcode:2009PNAS..106.8579S. doi:10.1073/pnas.0811691106. PMC 2688978. PMID 19439659.
11. Ahmed AF, de Bock CE, Lincz LF, Pundavela J, Zouikr I, Sontag E, et al. (December 2015). "FAT1 cadherin acts upstream of Hippo signalling through TAZ to regulate neuronal differentiation". Cellular and Molecular Life Sciences. 72 (23): 4653–69. doi:10.1007/s00018-015-1955-6. PMC 11113810. PMID 26104008. S2CID 15861327.
12. Morris LG, Kaufman AM, Gong Y, Ramaswami D, Walsh LA, Turcan Ş, et al. (March 2013). "Recurrent somatic mutation of FAT1 in multiple human cancers leads to aberrant Wnt activation". Nature Genetics. 45 (3): 253–61. doi:10.1038/ng.2538. PMC 3729040. PMID 23354438.
13. Meng P, Zhang YF, Zhang W, Chen X, Xu T, Hu S, et al. (January 2021). "Identification of the atypical cadherin FAT1 as a novel glypican-3 interacting protein in liver cancer cells". Scientific Reports. 11 (1): 40. doi:10.1038/s41598-020-79524-3. PMC 7794441. PMID 33420124.
14. Sadeqzadeh E, de Bock CE, Thorne RF (January 2014). "Sleeping giants: emerging roles for the fat cadherins in health and disease". Medicinal Research Reviews. 34 (1): 190–221. doi:10.1002/med.21286. PMID 23720094. S2CID 27462828.
15. ^ Sadeqzadeh E, de Bock CE, Zhang XD, Shipman KL, Scott NM, Song C, et al. (August 2011). "Dual processing of FAT1 cadherin protein by human melanoma cells generates distinct protein products". The Journal of Biological Chemistry. 286 (32): 28181–91. doi:10.1074/jbc.M111.234419. PMC 3151063. PMID 21680732.
16. Sadeqzadeh E, de Bock CE, O'Donnell MR, Timofeeva A, Burns GF, Thorne RF (September 2014). "FAT1 cadherin is multiply phosphorylated on its ectodomain but phosphorylation is not catalysed by the four-jointed homologue". FEBS Letters. 588 (18): 3511–7. doi:10.1016/j.febslet.2014.08.014. PMID 25150169. S2CID 23869464.
17. Wojtalewicz N, Sadeqzadeh E, Weiß JV, Tehrani MM, Klein-Scory S, Hahn S, et al. (2014). "A soluble form of the giant cadherin Fat1 is released from pancreatic cancer cells by ADAM10 mediated ectodomain shedding". PLOS ONE. 9 (3): e90461. Bibcode:2014PLoSO...990461W. doi:10.1371/journal.pone.0090461. PMC 3953070. PMID 24625754.
18. Shapiro IM, Cheng AW, Flytzanis NC, Balsamo M, Condeelis JS, Oktay MH, et al. (August 2011). "An EMT-driven alternative splicing program occurs in human breast cancer and modulates cellular phenotype". PLOS Genetics. 7 (8): e1002218. doi:10.1371/journal.pgen.1002218. PMC 3158048. PMID 21876675.
19. Braun GS, Kretzler M, Heider T, Floege J, Holzman LB, Kriz W, Moeller MJ (August 2007). "Differentially spliced isoforms of FAT1 are asymmetrically distributed within migrating cells". The Journal of Biological Chemistry. 282 (31): 22823–33. doi:10.1074/jbc.M701758200. PMID 17500054.
20. Nakaya K, Yamagata HD, Arita N, Nakashiro KI, Nose M, Miki T, Hamakawa H (August 2007). "Identification of homozygous deletions of tumor suppressor gene FAT in oral cancer using CGH-array". Oncogene. 26 (36): 5300–8. doi:10.1038/sj.onc.1210330. PMID 17325662. S2CID 22365273.
21. Chosdol K, Misra A, Puri S, Srivastava T, Chattopadhyay P, Sarkar C, et al. (January 2009). "Frequent loss of heterozygosity and altered expression of the candidate tumor suppressor gene 'FAT' in human astrocytic tumors". BMC Cancer. 9: 5. doi:10.1186/1471-2407-9-5. PMC 2631005. PMID 19126244.
22. Kwaepila N, Burns G, Leong AS (April 2006). "Immunohistological localisation of human FAT1 (hFAT) protein in 326 breast cancers. Does this adhesion molecule have a role in pathogenesis?". Pathology. 38 (2): 125–31. doi:10.1080/00313020600559975. PMID 16581652. S2CID 36772164.
23. de Bock CE, Ardjmand A, Molloy TJ, Bone SM, Johnstone D, Campbell DM, et al. (May 2012). "The Fat1 cadherin is overexpressed and an independent prognostic factor for survival in paired diagnosis-relapse samples of precursor B-cell acute lymphoblastic leukemia". Leukemia. 26 (5): 918–26. doi:10.1038/leu.2011.319. PMID 22116550. S2CID 205194465.

Further reading

• Bonaldo MF, Lennon G, Soares MB (September 1996). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Research. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
• Matsuyoshi N, Tanaka T, Toda K, Imamura S (June 1997). "Identification of novel cadherins expressed in human melanoma cells". The Journal of Investigative Dermatology. 108 (6): 908–13. doi:10.1111/1523-1747.ep12292703. PMID 9182820.
• Matsuyoshi N, Imamura S (June 1997). "Multiple cadherins are expressed in human fibroblasts". Biochemical and Biophysical Research Communications. 235 (2): 355–8. doi:10.1006/bbrc.1997.6707. PMID 9199196.
• Dias Neto E, Correa RG, Verjovski-Almeida S, Briones MR, Nagai MA, da Silva W, et al. (March 2000). "Shotgun sequencing of the human transcriptome with ORF expressed sequence tags". Proceedings of the National Academy of Sciences of the United States of America. 97 (7): 3491–6. Bibcode:2000PNAS...97.3491D. doi:10.1073/pnas.97.7.3491. PMC 16267. PMID 10737800.
• Brandenberger R, Wei H, Zhang S, Lei S, Murage J, Fisk GJ, et al. (June 2004). "Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation". Nature Biotechnology. 22 (6): 707–16. doi:10.1038/nbt971. PMID 15146197. S2CID 27764390.
• Tanoue T, Takeichi M (May 2004). "Mammalian Fat1 cadherin regulates actin dynamics and cell-cell contact". The Journal of Cell Biology. 165 (4): 517–28. doi:10.1083/jcb.200403006. PMC 2172355. PMID 15148305.
• Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, Mizushima-Sugano J, et al. (September 2004). "Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions". Genome Research. 14 (9): 1711–8. doi:10.1101/gr.2435604. PMC 515316. PMID 15342556.
• Wu Q (April 2005). "Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes". Genetics. 169 (4): 2179–88. doi:10.1534/genetics.104.037606. PMC 1449604. PMID 15744052.
• Magg T, Schreiner D, Solis GP, Bade EG, Hofer HW (July 2005). "Processing of the human protocadherin Fat1 and translocation of its cytoplasmic domain to the nucleus". Experimental Cell Research. 307 (1): 100–8. doi:10.1016/j.yexcr.2005.03.006. PMID 15922730.
• Blair IP, Chetcuti AF, Badenhop RF, Scimone A, Moses MJ, Adams LJ, et al. (April 2006). "Positional cloning, association analysis and expression studies provide convergent evidence that the cadherin gene FAT contains a bipolar disorder susceptibility allele". Molecular Psychiatry. 11 (4): 372–83. doi:10.1038/sj.mp.4001784. PMID 16402135.
• Schreiner D, Müller K, Hofer HW (October 2006). "The intracellular domain of the human protocadherin hFat1 interacts with Homer signalling scaffolding proteins". FEBS Letters. 580 (22): 5295–300. doi:10.1016/j.febslet.2006.08.079. PMID 16979624. S2CID 10267922.
• Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (November 2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983. S2CID 7827573.
• Nakaya K, Yamagata HD, Arita N, Nakashiro KI, Nose M, Miki T, Hamakawa H (August 2007). "Identification of homozygous deletions of tumor suppressor gene FAT in oral cancer using CGH-array". Oncogene. 26 (36): 5300–8. doi:10.1038/sj.onc.1210330. PMID 17325662. S2CID 22365273.
• Braun GS, Kretzler M, Heider T, Floege J, Holzman LB, Kriz W, Moeller MJ (August 2007). "Differentially spliced isoforms of FAT1 are asymmetrically distributed within migrating cells". The Journal of Biological Chemistry. 282 (31): 22823–33. doi:10.1074/jbc.M701758200. PMID 17500054.

• Genes on human chromosome 4
• Biology of bipolar disorder
• Tumor suppressor genes