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FCB superphylum

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Phylum of bacteria For Bacteroidota class, see Sphingobacteriia.

FCB superphylum
Bacteroides spp.
Scientific classification Edit this classification
Domain: Bacteria
Clade: FCB group
Phyla
Synonyms

Sphingobacteria Cavalier-Smith, 1987

The FCB group is a superphylum of bacteria named after the main member phyla Fibrobacterota, Chlorobiota, and Bacteroidota. The members are considered to form a clade due to a number of conserved signature indels.

Cavalier-Smith calls the equivalent grouping a phylum by the name of Sphingobacteria. It contains the classes Chlorobiota, Fibrobacterota, Bacteroidota, and Flavobacteria. However, this megaclassification is not followed by the larger scientific community.

FCB group 16S rRNA based LTP_12_2021 GTDB 07-RS207 by Genome Taxonomy Database
FCB

"Hydrogenedentes"

"Fermentibacteria"

Gemmatimonadota

"Latescibacteria"

Fibrobacterota

"Delphibacteria"

"Cloacimonetes"

"Zixibacteria"

Calditrichota

"Marinimicrobia"

Bacteroidota–Chlorobiota

Ignavibacteriota

"Kryptonia"

"Kapabacteria"

Chlorobiota

Rhodothermota

Bacteroidota

Fibrobacterota

Gemmatimonadota

Calditrichota

Ignavibacteriota

Chlorobiota

Rhodothermota

Balneolota

Bacteroidota

"Latescibacteria (incl. "Handelsmanbacteria")

"Edwardsbacteria""

"Zixibacteria"

"Eisenbacteria"

"Krumholzibacteriota" (incl. "Delphibacteria")

"Fermentibacteria" (incl. "Aegiribacteria")

Gemmatimonadota (incl. "Glassbacteria")

"Hydrothermota" (incl. "Stahlbacteria", "Pyropristinus")

"Cloacimonetes"

Fibrobacterota (incl. "Raymondbacteria")

"Delongbacteria"

Calditrichota

"Marinisomatota"

Bacteroidota

"Kapabacteria"

"Kryptonia"

"Ignavibacteriia"

"Chlorobiia"

Rhodothermia (incl. Balneolales)

Bacteroidia

An analogous situation is seen with the PVC group/Planctobacteria.

The Bacteroidota–Chlorobiota group in brown is visible on this 2016 tree of life using ribosomal protein sequences

Notes

See also

References

  1. Cavalier-Smith, T. (1987). The origin of cells: a symbiosis between genes, catalysts and membranes. Cold Spring Harbor Symposia on Quantitative Biology 52, 805-24, , .
  2. ^ Gupta, R. S. (2004). "The Phylogeny and Signature Sequences Characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes". Critical Reviews in Microbiology. 30 (2): 123–143. doi:10.1080/10408410490435133. PMID 15239383. S2CID 24565648.
  3. Cavalier-Smith T (2006). "Rooting the tree of life by transition analyses". Biol. Direct. 1: 19. doi:10.1186/1745-6150-1-19. PMC 1586193. PMID 16834776.
  4. Krieg, N.R.; Ludwig, W.; Whitman, W.B.; Hedlund, B.P.; Paster, B.J.; Staley, J.T.; Ward, N.; Brown, D.; Parte, A. (November 24, 2010) . George M. Garrity (ed.). The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York: Springer. p. 908. ISBN 978-0-387-95042-6. British Library no. GBA561951.
  5. Classification in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
  6. Emiley A Eloe-Fadrosh et al. 2017, Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications 7 · January 2016 DOI: 10.1038/ncomms1047
  7. Kirkegaard, Rasmus Hansen; Dueholm, Morten Simonsen; McIlroy, Simon Jon; Nierychlo, Marta; Karst, Søren Michael; Albertsen, Mads; Nielsen, Per Halkjær (October 2016). "Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters". The ISME Journal. 10 (10): 2352–2364. doi:10.1038/ismej.2016.43. ISSN 1751-7370. PMC 5030696. PMID 27058503.
  8. "The LTP". Retrieved 23 February 2021.
  9. "LTP_all tree in newick format". Retrieved 23 February 2021.
  10. "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
  11. "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
  12. "ar53_r207.sp_label". Genome Taxonomy Database. Retrieved 20 June 2022.
  13. "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
  14. Hug, Laura A.; Baker, Brett J.; Anantharaman, Karthik; Brown, Christopher T.; Probst, Alexander J.; Castelle, Cindy J.; Butterfield, Cristina N.; Hernsdorf, Alex W.; Amano, Yuki; Ise, Kotaro; Suzuki, Yohey; Dudek, Natasha; Relman, David A.; Finstad, Kari M.; Amundson, Ronald; Thomas, Brian C.; Banfield, Jillian F. (11 April 2016). "A new view of the tree of life". Nature Microbiology. 1 (5): 16048. doi:10.1038/nmicrobiol.2016.48. PMID 27572647.
Prokaryotes: Bacteria classification
Domain
Archaea
Bacteria
Eukaryota
(major groups
Excavata
Diaphoretickes
Hacrobia
Cryptista
Rhizaria
Alveolata
Stramenopiles
Plants
Amorphea
Amoebozoa
Opisthokonta
Animals
Fungi
Mesomycetozoea)
Terrabacteria
BV1, BV3, BV5
others
Cyanoprokaryota
Firmicutes
BV3
Low GC
  • Bacillota
  • Bacillota A
    • "Clostridiia"
    • "Thermoanaerobacteria"
    • "Thermosediminibacteria"
  • Bacillota D
  • Bacillota E
    • "Sulfobacillia"
    • "Symbiobacteriia"
    • "Thermaerobacteria"
  • Bacillota G
    • "Hydrogenisporia"
    • Limnochordia
  • "Desulfotomaculota"
    • "Carboxydocellia"
    • "Carboxydothermia"
    • "Dehalobacteriia"
    • "Desulfitobacteriia"
    • "Desulfotomaculia"
    • "Moorellia"
    • "Peptococcia"
    • "Syntrophomonadia"
    • "Thermincolia"
  • "Halanaerobiaeota"
  • "Selenobacteria"
CPR group
Thermotogida
Synergistetes
Thermocalda
Fusobacterida
Hydrobacteria
BV2, BV4
Clade 1
Clade 2
Spirochaeto
bacteriobiontes
PVC group
(Planctobacteria)
FCB group
(Sphingobacteria)
Proteobacteria
BV2
Aquificida
Deltaproteobacteria
others
others
Taxon identifiers
Sphingobacteria


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