Misplaced Pages

Haplogroup NO1

Article snapshot taken from Wikipedia with creative commons attribution-sharealike license. Give it a read and then ask your questions in the chat. We can research this topic together.
(Redirected from Haplogroup NO) Human Y-chromosome DNA haplogroup
Haplogroup NO1
Possible time of originFormed circa 45,400–45,840 years BP
(NO/NO1, based on YFull 2017, and previous estimates of: 41,500 years BP, 48,871 years BP, and 50,800 or 43,500 years BP)
Coalescence ageCirca 41,500 – 40,067 years BP (NO/NO1, based on YFull 2017, and previous estimates of: 36,800 years BP, 41,900 years BP, and 44,700 or 38,300 years BP depending on mutation rate)
Possible place of originSoutheast Asia or East Asia (Northern China)
AncestorK-M2313 (M2313/Z4858)
DescendantsN (M231) and O (M175).
Defining mutationsM214/Page39; F176/M2314; CTS5858/M2325/F346; CTS11572

Haplogroup NO1 (M214/Page39; F176/M2314; CTS5858/M2325/F346; CTS11572), also known as NO-M214, is a human Y-chromosome DNA haplogroup. NO1 is the sole confirmed subclade of Haplogroup K- M2313 (a.k.a. NO-M2313, K2a1), which is the sole subclade of Haplogroup K2a (K-M2308). NO is the dominant Y-DNA haplogroup in most parts of eastern and northern Eurasia, including East Asia, Siberia and northern Fennoscandia.

The location of NO1 at the SNP M214 follows the taxonomy set out by Karmin et al. 2022, and conforms to a structure shown by ISOGG (2022). (However neither Karmin nor ISOGG has integrated one of the findings of Poznik et al. 2016: that there was a subclade generation both above haplogroup NO1 (M214) and beneath K-M2308. That is, both ISOGG and Karmin et al. continued to equate K2a with haplogroup NO.)

Before 2016, the subclades compromising both NO and NO1 were not recognised, and were regarded as synonymous with K2a. Researchers such as David Poznik (Poznik et al. 2016) documented examples of previously unknown subclades of haplogroup K2, in both ancient remains and living individuals, which: (firstly) had several, varying suites of the SNPs regarded previously as uniquely defining K2a and NO, but also (secondly) lacked any of the SNPs specifically identifying haplogroups Haplogroup N (M231) and Haplogroup O (M175). This demonstrated conclusively that multiple stages of development separated K2a from NO, which therefore constituted "grandparent" and "grandchild" clades. Poznik et al. 2016 used the name "K2a1" (a.k.a. K-M2313) for the Y-DNA of some of the individuals who belonged to K2a(xK2a*,NO), while also mentioning that K-M2313 did not include all examples of K2a(xK2a*,NO).

As of 2022, the International Society of Genetic Genealogy (ISOGG) refers to NO-M214 as "NO1", and to K2a (M2308)/K-M2313 as "NO". There may be at least one other primary branch of NO: the ISOGG official Y-DNA haplogroup tree lists a haplogroup known as "NO1~" [sic] (CTS707/M2306) alongside NO-M214 (which ISOGG refers to as "NO1"). The tilde (~) indicates that its exact position of NO1~ in the phylogeny is unknown. It may be a primary branch or sibling of NO, it may be a primary branch or sibling of K2a, K-M2313, or it may instead be a primary branch of K2a.

Based on the projected origins of K2a, K-M2313, and the basal haplogroups N* and O* respectively, NO* probably originated in East Asia.

Distribution

Migration of Haplogroup NO.

While there is some evidence of NO* being found in living individuals, these examples are not well-researched. Further research may instead identify them as belonging to N* (M231), N1, or the provisional subclade N2 (F3373/M2283/Page56/S323). These cases include:

Members of Haplogroup NO* include a Telugu of Indian origin sampled in the United Kingdom and a Malay sampled in Singapore.

Two sets of ancient remains previously considered as possibly belonging to NO have since been reclassified upstream to K2a.

  • Ust'-Ishim man dates from approximately 45,000 BP and was found in Omsk Oblast, Russia. (Until 2016 these remains were erroneously classified as K2*.)
  • Oase 1: the remains found in Romania of a male who lived 37,000-42,000 years BP.

Likewise, cases previously regarded as possible examples of NO* or NO1*, and since ruled out, include:

  • two Han Chinese males previously found to be negative for M175 (i.e. Haplogroup O) and LLY22g (an obsolete, possibly inaccurate marker for N1), have subsequently have been found to belong to N* (N-M231), and;
  • a clade first identified in South India, defined by the SNP M147 and labelled "pre-NO" and "Haplogroup X", among other names, was found to be a sibling of NO (K2a) within Haplogroup K2 (K-M526); the new clade was renamed K2e.

Subclades

Phylogenetic tree

This phylogeny of haplogroups K2a, K2a1, and NO is based on YFull 2018, Poznik 2016, ISOGG 2018, Karafet 2008.

K2a K-M2308 (M2308) Found only in the ancient remains "Ust'-Ishim man" (c. 45,000 BP) and "Oase 1" (c. 39,500 BP).

  • K2a1 K-M2313 (M2313/Z4858) Named by Poznik 2016; previously not distinguished from K2a.
    • NO K-M214 (M214/Page39; F176/M2314; CTS5858/M2325/F346; CTS11572) Poznik 2016 and ISOGG 2018 distinguish between NO1 (M214), N and O.
        • N M231; CTS2947/M2175; Z4891; CTS10118
        • O M175/P186/P191/P196; F369/M1755; F380/M1757/S27659

The position of NO1~ (CTS707/M2306), a subclade of K2a1 or NO, in this phylogeny is unclear.

See also

Phylogenetic tree of human Y-chromosome DNA haplogroups
This article needs to be updated. Please help update this article to reflect recent events or newly available information. (February 2021)
"Y-chromosomal Adam"
A00 A0-T 
A0 A1 
A1a A1b
A1b1 BT
B CT
DE CF
D E C F
F1  F-Y27277   F3  GHIJK
G HIJK
IJK H
IJ K
I   J     LT        K2 
I1   I2  J1   J2  L     T  K2e K2d K2c K2b   K2a
K2b1    P  K-M2313 
S   M     P1   NO1
P1c P1b P1a N O
R Q
Footnotes
  1. Van Oven M, Van Geystelen A, Kayser M, Decorte R, Larmuseau HD (2014). "Seeing the wood for the trees: a minimal reference phylogeny for the human Y chromosome". Human Mutation. 35 (2): 187–91. doi:10.1002/humu.22468. PMID 24166809. S2CID 23291764.
  2. International Society of Genetic Genealogy (ISOGG; 2015), Y-DNA Haplogroup Tree 2015. (Access date: 1 February 2015.)
  3. Haplogroup A0-T is also known as A-L1085 (and previously as A0'1'2'3'4).
  4. Haplogroup A1 is also known as A1'2'3'4.
  5. F-Y27277, sometimes known as F2'4, is both the parent clade of F2 and F4 and a child of F-M89.
  6. Haplogroup LT (L298/P326) is also known as Haplogroup K1.
  7. Between 2002 and 2008, Haplogroup T-M184 was known as "Haplogroup K2". That name has since been re-assigned to K-M526, the sibling of Haplogroup LT.
  8. Haplogroup K2b (M1221/P331/PF5911) is also known as Haplogroup MPS.
  9. Haplogroup K2b1 (P397/P399) is also known as Haplogroup MS, but has a broader and more complex internal structure.
  10. Haplogroup P (P295) is also klnown as K2b2.
  11. K-M2313*, which as yet has no phylogenetic name, has been documented in two living individuals, who have ethnic ties to India and South East Asia. In addition, K-Y28299, which appears to be a primary branch of K-M2313, has been found in three living individuals from India. See: Poznik op. cit.; YFull YTree v5.08, 2017, "K-M2335", and; PhyloTree, 2017, "Details of the Y-SNP markers included in the minimal Y tree" (Access date of these pages: 9 December 2017)
  12. Haplogroup S, as of 2017, is also known as K2b1a. (Previously the name Haplogroup S was assigned to K2b1a4.)
  13. Haplogroup M, as of 2017, is also known as K2b1b. (Previously the name Haplogroup M was assigned to K2b1d.)

References

  1. ^ YFull YTree v5.08, 2017, "K-M2335" (9 December 2017); PhyloTree, 2017, "Details of the Y-SNP markers included in the minimal Y tree" (9 December 2017); GeneticHomeland.com, 2016, DNA Marker Index Chromosome Y V4208 (9 December 2017).
  2. ^ YFull Haplogroup YTree v5.06 at 25 September 2017
  3. ^ Karmin, Monika; Saag, Lauri; Vicente, Mário; et al. (2015). "", "A recent bottleneck of Y chromosome diversity coincides with a global change in culture". Genome Research. 25 (4): 459–466. doi:10.1101/gr.186684.114. PMC 4381518. PMID 25770088.
  4. ^ G. David Poznik, Yali Xue, Fernando L. Mendez, et al., 2016, "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences." Nature Genetics vol. 48, no. 6 (June): pp. 593–599. doi:10.1038/ng.3559.
  5. ^ Rootsi, Siiri; Zhivotovsky, Lev A; Baldovič, Marian; Kayser, Manfred; Kutuev, Ildus A; Khusainova, Rita; Bermisheva, Marina A; Gubina, Marina; Fedorova, Sardana A; Ilumäe, Anne-Mai; Khusnutdinova, Elza K; Voevoda, Mikhail I; Osipova, Ludmila P; Stoneking, Mark; Lin, Alice A; Ferak, Vladimir; Parik, Jüri; Kivisild, Toomas; Underhill, Peter A; Villems, Richard; et al. (2007). "A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe". European Journal of Human Genetics. 15 (2): 204–211. doi:10.1038/sj.ejhg.5201748. PMID 17149388.
  6. ^ G. David Poznik et al., 2016, "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences" Nature Genetics, no. 48, pp. 593–599.
  7. 『DNA・考古・言語の学際研究が示す新・日本列島史 日本人集団・日本語の成立史』
  8. ^ ISOGG, Y-DNA Haplogroup Tree 2018 (17 January 2018).
  9. ^ Monika Karmin et al., 2022, "Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages", Molecular Biology and Evolution, vol. 39, i. 3 (March). (Access: 25 January 2023.)
  10. Wang, Chuan-Chao; Li, Hui (2013-06-03). "Inferring human history in East Asia from Y chromosomes". Investigative Genetics. 4 (1): 11. doi:10.1186/2041-2223-4-11. ISSN 2041-2223. PMC 3687582. PMID 23731529.
  11. ^ Hammer et al. (2005) "Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes," Archived 2009-03-04 at the Wayback Machine The Japan Society of Human Genetics, 2005
  12. ^ Xue, Yali; Zerjal, Tatiana; Bao, Weidong; Zhu, Suling; Shu, Qunfang; Xu, Jiujin; Du, Ruofu; Fu, Songbin; Li, Pu; et al. (2006). "Male demography in East Asia: a north-south contrast in human population expansion times". Genetics. 172 (4): 2431–2439. doi:10.1534/genetics.105.054270. PMC 1456369. PMID 16489223.
  13. "Archived copy" (PDF). Archived from the original (PDF) on 2016-03-24. Retrieved 2017-03-10.{{cite web}}: CS1 maint: archived copy as title (link)
  14. Poznik, GD; Xue, Y; Mendez, FL; Willems, TF; Massaia, A; Wilson Sayres, MA; Ayub, Q; McCarthy, SA; Narechania, A; Kashin, S; Chen, Y; Banerjee, R; Rodriguez-Flores, JL; Cerezo, M; Shao, H; Gymrek, M; Malhotra, A; Louzada, S; Desalle, R; Ritchie, GR; Cerveira, E; Fitzgerald, TW; Garrison, E; Marcketta, A; Mittelman, D; Romanovitch, M; Zhang, C; Zheng-Bradley, X; Abecasis, GR; McCarroll, SA; Flicek, P; Underhill, PA; Coin, L; Zerbino, DR; Yang, F; Lee, C; Clarke, L; Auton, A; Erlich, Y; Handsaker, RE; Bustamante, CD; Tyler-Smith, C (2016). "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences". Nat Genet. 48 (6): 593–9. doi:10.1038/ng.3559. hdl:11858/00-001M-0000-002A-F024-C. PMC 4884158. PMID 27111036.
  15. Tatiana M. Karafet, Brian Hallmark, Murray P. Cox et al., "Major East-West Division Underlies Y Chromosome Stratification Across Indonesia," MBE Advance Access published March 5, 2010.
  16. Karafet; Mendez, F. L.; Meilerman, M. B.; Underhill, P. A.; Zegura, S. L.; Hammer, M. F.; et al. (2008). "Abstract New Binary Polymorphisms Reshape and Increase Resolution of the Human Y-Chromosomal Haplogroup Tree". Genome Research. 18 (5): 830–8. doi:10.1101/gr.7172008. PMC 2336805. PMID 18385274.

External links

Category: