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This is a list of all former managers of the Colombian football team Atlético Junior. Current coach Luis Amaranto Perea took over from Julio Comesaña on 14 September 2020.
Managers
Jack Greenwell (1940–42)
Roberto Meléndez (1948)
Tim (1950–51)
Friedrich Donnenfeld (1951–53)- Marinho Rodrigues [pt] (1966)
- Antonio de la Hoz [es] (1966)
- Narciso Pino (1966)
- Efraín Sánchez (1966–67)
William Martínez (1967)- Luis Alberto Miloc [es] (1967–68)
Julio Tocker (1969)- Othon Dacunha (1969)
- Luis Alberto Miloc [es] (1969–71)
- Efraín Sánchez (1971)
- Marinho Rodrigues [pt] (1972)
- Marcos Coll (1973)
- Rubens (1973)
- Francisco Villegas (1973)
- Marinho Rodrigues [pt] (1974)
- Marcos Coll (1975)
- Carlos Peña (1975)
- Luis Alberto Miloc [es] (1975)
- José Varacka (1975–77)
- Carlos Peña (1977)
- Juan Ramón Verón (1977)
- Mario Patrón (1978)
- Carlos Peña (1978)
- Miguel Ángel López (1978)
- Carlos Peña (1978)
- Vladislao Cap (1978)
- Juan Ramón Verón (1979)
- José Varacka (1980–81)
- Marcos Coll (1981)
- Carlos Peña (1981)
- Néstor Manfredi (1981–82)
- Marcos Coll (1982)
- Néstor Manfredi (1982)
- Othon Dacunha (1982)
- Jorge Solari (1983)
- José Varacka (1984)
- Roberto Saporiti (1985)
- Eduardo Solari (1986)
- Efraín Sánchez (1986–87)
- Carlos Peña (1987)
- José Varacka (1987–88)
- Carlos Peña (1988)
- Miguel Ángel López (1988–89)
- Carlos Peña (1990)
- Hugo Gallego (1990)
- Julio Comesaña (1991)
- Miguel Ángel López (1992)
- Dulio Miranda (1992)
- Carlos Peña (1992)
- Julio Comesaña (1992–94)
- Dulio Miranda (1994)
- Carlos Restrepo (1995)
- Luis Augusto García [es] (1995–96)
- Juan Mujica (1995–96)
- Julio Comesaña (1996–97)
- Luis Grau (1996–97)
Julio César Uribe (1996–97)- Javier Castell (1998)
- Miguel Ángel López (1998–Feb 00)
- Juan José Peláez (Feb 2000–June 00)
- Norberto Peluffo (July 2000–Sept 01)
- Dulio Miranda (interim) (Sept 2001)
- Salvador Capitano (Sept 2001–31 Dec 2001)
- Luis Grau (interim) (Feb 2002)
- Dulio Miranda (Feb 2002)
- Julio Comesaña (March 2002–Sept 02)
- Alexis Mendoza (interim) (Sept 2002)
Dragan Miranović (Feb 2003–June 3)- Dušan Drašković (July 2003–Aug 03)
- Othon Dacunha (interim) (Aug 2003)
- Jorge Luis Pinto (Aug 2003–June 4)
- Miguel Ángel López (Aug 2004–May 5)
- Carlos Ischia (July 2005–Sept 05)
- Norberto Peluffo (Sept 2005–April 6)
- Jorge Alcázar (interim) (April 2006–May 6)
Dragan Miranović (July 2006–Oct 06)- Miguel Ángel López (Oct 2006–May 7)
- Luis Grau (July 2007–Nov 08)
- Santiago Escobar (1 Jan 2008 – 1 March 2008)
- Julio Comesaña (11 March 2008 – 31 Dec 2009)
- Diego Umaña (1 Jan 2010 – 31 Dec 2010)
- Ó.H. Quintabani (16 Nov 2010 – 30 May 2011)
- Fernel Díaz (interim) (May 2011–June 11)
- Jorge Luis Pinto (1 June 2011 – 31 Aug 2011)
- José "Cheché" Hernández [es] (Sept 1, 2011–31 Dec 2012)
- Alexis García (1 Jan 2013 – 4 June 2013)
- Miguel Ángel López (5 June 2013 – 19 March 2014)
- David Pinillos (May 2014)
- Julio Comesaña (May 2014–Dec 14)
- Alexis Mendoza (Jan 2015–July 2016)
- Giovanni Hernández (25 July 2016 – 21 November 2016)
- Alberto Gamero (27 December 2016 – 26 March 2017)
- Julio Comesaña (1 April 2017 – 5 December 2017)
- Alexis Mendoza (14 December 2017 – 9 April 2018)
- Julio Comesaña (11 April 2018 – 19 December 2018)
- Luis Fernando Suárez (20 December 2018 – 3 May 2019)
- Julio Comesaña (4 May 2019 – 14 September 2020)
- Luis Amaranto Perea (14 September 2020 – 17 August 2021)
- Arturo Reyes (17 August 2021 – present)