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List of sequenced algae genomes

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This list of sequenced algal genomes contains algal species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle-only sequences. For plant genomes see the list of sequenced plant genomes. For plastid sequences, see the list of sequenced plastomes. For all kingdoms, see the list of sequenced genomes.

Dinoflagellates (Alveolata)

See also List of sequenced protist genomes.

Organism

strain

Type Relevance Genome size Number

of genes

predicted

Organization Year of

completion

Assembly

status

Links
Breviolum minutum (Symbiodinium minutum; clade B1) Dinoflagellate Coral symbiont 1.5 Gb 47,014 Okinawa Institute of Science and Technology 2013 Draft OIST Marine Genomics
Cladocopium goreaui (Symbiodinium goreaui; clade C, type C1) Dinoflagellate Coral symbiont 1.19 Gb 35,913 Reef Future Genomics (ReFuGe) 2020 / University of Queensland 2018 Draft ReFuGe 2020
Cladocopium C92 strain Y103 (Symbiodinium sp. clade C; putative type C92) Dinoflagellate Foraminiferan symbiont Unknown (assembly size 0.70 Gb) 65,832 Okinawa Institute of Science and Technology 2018 Draft OIST Marine Genomics
Fugacium kawagutii CS156=CCMP2468 (Symbiodinium kawagutii; clade F1) Dinoflagellate Coral symbiont? 1.07 Gb 26,609 Reef Future Genomics (ReFuGe) 2020 / University of Queensland 2018 Draft ReFuGe 2020
Fugacium kawagutii CCMP2468 (Symbiodinium kawagutii; clade F1) Dinoflagellate Coral symbiont? 1.18 Gb 36,850 University of Connecticut / Xiamen University 2015 Draft S. kawagutii genome project
Polarella glacialis CCMP1383 Dinoflagellate Psychrophile, Antarctic 3.02 Gb (diploid), 1.48 Gbp (haploid) 58,232 University of Queensland 2020 Draft UQ eSpace
Polarella glacialis CCMP2088 Dinoflagellate Psychrophile, Arctic 2.65 Gb (diploid), 1.30 Gbp (haploid) 51,713 University of Queensland 2020 Draft UQ eSpace
Symbiodinium microadriaticum (clade A) Dinoflagellate Coral symbiont 1.1 Gb 49,109 King Abdullah University of Science and Technology 2016 Draft Reef Genomics
Symbiodinium A3 strain Y106 (Symbiodinium sp. clade A3) Dinoflagellate symbiont Unknown (assembly size 0.77 Gb) 69,018 Okinawa Institute of Science and Technology 2018 Draft OIST Marine Genomics

Cryptomonad

Organism

strain

Type Relevance Genome size Number

of genes

predicted

Organization Year of

completion

Assembly

status

Links
Cryptophyceae sp. CCMP2293 Nanoflagellate Nucleomorph, Psychrophile 534.5 Mb 33,051 Joint Genome Institute 2016 JGI Genome Portal
Guillardia theta Eukaryote Endosymbiosis 87.2 Mb 24, 840 Dalhousie University 2012 The Greenhouse

Glaucophyte

Organism

strain

Type Relevance Genome

size

Number

of genes

predicted

Organization Year of

completion

Assembly

status

Links
Cyanophora

paradoxa

Model

Organism

70.2 Mb 3,900 Rutgers University 2012 Draft v1 The Greenhouse

Cyanophora Genome Project

Cyanophora

paradoxa

Model

Organism

99.94 Mb 25,831 Rutgers University 2019 Draft v2 Cyanophora Genome Project

Green algae

Organism

strain

Type Relevance Genome

size

Number

of genes

predicted

Organization Year of

completion

Assembly

status

Links
Asterochloris sp. Cgr/DA1pho Photobiont 55.8 Mb 10,025 Duke University 2011 JGI Genome Portal
Auxenochlorella protothecoides Biofuels 22.9 Mb 7,039 Tsinghua University 2014 The Greenhouse
Bathycoccus prasinos Comparative analysis 15.1 Mb 7,900 Joint Genome Institute 2012 JGI Genome Portal
Chlamydomonas reinhardtii CC-503

cw92 mt+

Model Organism 111.1 Mb 17,741 Joint Genome Institute 2017 Phytozome

The Greenhouse

Chlorella sorokiniana str. 1228 Biofuels 61.4 Mb Los Alamos National Lab 2018 The Greenhouse
Chlorella sorokiniana UTEX 1230 Biofuels 58.5 Mb Los Alamos National Lab 2018 The Greenhouse
Chlorella sorokiniana DOE1412 Biofuels 57.8 Mb Los Alamos National Lab 2018 The Greenhouse
Chlorella variabilis NC64A Biofuels 46.2 Mb 9,791 2010 The Greenhouse
Chlorella vulgaris Biofuels 37.3 Mb National Renewable

Energy Laboratory

2015 The Greenhouse
Coccomyxa subellipsoidea

sp. C-169

Biofuels 48.8 Mb 9839 Joint Genome Institute 2012 Phytozome

The Greenhouse

Dunaliella salina

CCAP19/18

Halophile

Biofuels

Beta-carotene and glycerol production

343.7 Mb 16,697 Joint Genome Institute 2017 Phytozome
Eudorina sp. Multicellular alga,

model organism

~180 Mb University of Tokyo 2018
Gonium pectorale 148.81 Mb Kansas State University 2016
Micromonas commoda NOUM17 (RCC288) Marine phytoplankton 21.0 Mb 10,262 Monterey Bay Aquarium Research Institute 2013 JGI Genome Portal
Micromonas

pusilla CCMP-1545

Marine

phytoplankton

21.9 Mb 10,575 Micromonas

Genome

Consortium

2009 Phytozome

The Greenhouse

Micromonas

pusilla

RCC299/NOUM17

Marine

phytoplankton

20.9 Mb 10,056 Joint Genome

Institute

2009 Phytozome

The

Greenhouse

Monoraphidium

neglectum

Biofuels 69.7 Mb 16,755 Bielefeld

University

2013 The

Greenhouse

Ostreococcus

lucimarinus

CCE9901

Small genome 13.2 Mb 7,603 Joint Genome Institute 2007 Phytozome
Ostreococcus

tauri OTH95

Small genome 12.9 Mb 7,699 CNRS 2014 The Greenhouse
Ostreococcus sp.

RCC809

Small genome 13.3 Mb 7,492 Joint Genome

Institute

2009 JGI
Picochlorum

soloecismus

DOE101

Biofuels 15.2 Mb 7,844 Los Alamos

National Lab

2017 The Greenhouse
Picochlorum

SENEW3

Biofuels 13.5 Mb 7,367 Rutgers University 2014 The Greenhouse
Scenedesmus

obliquus DOE0152Z

Biofuels 210.3 Mb Brooklyn College 2017 The Greenhouse
Symbiochloris reticulata (Metagenome) Photobiont 58.6 Mb 12,720 Joint Genome Institute 2018 JGI Genome Portal
Tetraselmis sp. Biofuels 228 Mb Los Alamos

National Lab

2018 The Greenhouse
Pedinomonas minor (Chlorophyta) 55 Mb New Phytologist 2022
Volvox carteri Multicellular alga,

model organism

131.2 Mb 14,247 Joint Genome

Institute

2010 Phytozome

The

Greenhouse

Yamagishiella unicocca Multicellular alga,

model organism

~140 Mb University of Tokyo 2018

Haptophyte

Organism

strain

Type Relevance Genome

size

Number

of genes

predicted

Organization Year of

completion

Assembly

status

Links
Chrysochromulina

parva

Biofuels 65.8 Mb Los Alamos National Laboratory 2018 The Greenhouse
Chrysochromulina tobinii CCMP291 Model organism, Biofuels 59.1 Mb 16,765 University of Washington 2015 The Greenhouse
Emiliania huxleyi Coccolithophore Alkenone production, Algal blooms 167.7 Mb 38,554 Joint Genome Institute 2013 The Greenhouse
Pavlovales sp. CCMP2436 Psychrophile 165.4 Mb 26,034 Joint Genome Institute 2016 JGI Genome Portal

Heterokonts/Stramenopiles

Organism

strain

Type Relevance Genome

size

Number

of genes

predicted

Organization Year of

completion

Assembly

status

Links
Aureococcus

anophagefferens

Harmful Algal

Bloom

50.1 Mb 11,522 Joint Genome Institute 2011 The Greenhouse
Ectocarpus siliculosus Brown algae Model organism 198.5 Mb 16,269 Genoscope 2012 The Greenhouse
Fragilariopsis cylindrus CCMP1102 Psychrophile 61.1 Mb 21,066 University of East Anglia, Joint Genome Institute 2017 JGI Genome Portal
Nannochloropsis

gaditana

Biofuels 28.5 Mb 10,486 University of Padua 2014 The Greenhouse
Nannochloropsis

oceanica

Biofuels 31.5 Mb Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology 2016 The Greenhouse
Nannochloropsis Salina CCMP1766 Biofuels 24.4 Mb Chinese Academy of Sciences, Qingdao Institute of Bioenergy and Bioprocess Technology 2016 The Greenhouse
Ochromonadaceae sp. CCMP2298 Psychrophile 61.1 Mb 20,195 Joint Genome Institute 2016 JGI Genome Portal
Pelagophyceae sp. CCMP2097 Psychrophile 85.2 Mb 19,402 Joint Genome Institute 2016 JGI Genome Portal
Phaeodactylum tricornutum Model organism 27.5 Mb 10,408 Diatom Consortium 2008 The Greenhouse
Pseudo-nitzschia multiseries CLN-47 218.7 Mb 19,703 Joint Genome Institute 2011 JGI Genome Portal
Saccharina japonica Brown algae Commercial crop 543.4 Mb Chinese Academy of Sciences, Beijing Institutes of Life Science 2015 The Greenhouse
Thalassiosira oceanica CCMP 1005 Model organism 92.2 Mb 34,642 The Future Ocean 2012 The Greenhouse
Thalassiosira pseudonana model organism 32.4 Mb 11,673 Diatom Consortium 2009 The Greenhouse

Red algae (Rhodophyte)

Organism

strain

Type Relevance Genome

size

Number

of genes

predicted

Organization Year of

completion

Assembly

status

Links
Chondrus crispus Carrageenan production, model organism 105 Mb 9,606 Genoscope 2013 The Greenhouse
Cyanidioschyzon

merolae 10D

Model

organism

16.5 Mb 4,775 National Institute

of Genetics, Japan

2007 The Greenhouse
Galdieria sulphuraria Extremophile 12.1 Mb The University of York 2016 The Greenhouse
Gracilariopsis chorda Mesophile 92.1 Mb 10,806 Sungkyunkwan University 2018
Porphyridium purpureum Mesophile 19.7 Mb 8,355 Rutgers University 2013
Porphyra umbilicalis Mariculture 87.6 Mb 13,360 University of Maine 2017 Phytozome
Pyropia yezoensis Mariculture 43.5 Mb 10,327 National Research Institute of Fisheries Science 2013

Rhizaria

Organism

strain

Type Relevance Genome

size

Number

of genes

predicted

Organization Year of

completion

Assembly

status

Links
Bigelowiella natans Model organism 94. Mb 21,708 Dalhousie University 2012 The Greenhouse

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