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NBPF15
Identifiers
Aliases	NBPF15, AB14, AG3, NBPF16, neuroblastoma breakpoint family member 15, NBPF member 15, MGC8902
External IDs	OMIM: 610414, 614005; HomoloGene: 41035; GeneCards: NBPF15; OMA:NBPF15 - orthologs
Gene location (Human) Chr. Chromosome 1 (human) Band 1q21.1 Start 144,421,386 bp End 144,461,674 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in ventricular zone cerebellar hemisphere thymus right hemisphere of cerebellum stromal cell of endometrium thyroid gland ganglionic eminence right lobe of thyroid gland left lobe of thyroid gland right lobe of liver n/a More reference expression data BioGPS n/a
Orthologs Species Human Mouse Entrez 284565 n/a Ensembl ENSG00000266338 n/a UniProt Q8N660 n/a RefSeq (mRNA) NM_001102663 NM_001170755 NM_173638 n/a RefSeq (protein) NP_001164226 NP_775909 n/a Location (UCSC) Chr 1: 144.42 – 144.46 Mb n/a PubMed search n/a
Wikidata
View/Edit Human

Neuroblastoma breakpoint family, member 15, also known as NBPF15, is a protein which in humans is encoded by the NBPF15 gene. The gene is 18762 bp long, with mRNA that is 3837 bp long. The gene is located on chromosome 1q21.1. Its sub-cellular location is predicted to be in the nucleus and cytoplasm. It contains what is known as the NBPF repeat, which is a two-exon stretch of sequence that is characteristic of all 21 members of the NBPF gene family. The repeat is considered the ancestral exons, and the NBPF family has been linked to primate evolution.

Function

The function of NBPF16 is not fully understood. It is a member of the NBPF family of proteins, which have been linked to possible roles in oncogenesis and tumor suppressor genes.

Protein

The protein is composed of 670 amino acids. The gene contains five domains of unknown function, called DUF1220. DUF1220 domains are found in all members of the NBPF gene family, although the number differs between each member. Repetitive structure with high intergenic and intragenic sequence conservation, both in coding and noncoding regions. Makes it possible for homologous recombination to occur easily between different alleles. The repetitiveness of it, and the other members of the NBPF gene family is thought to have arisen from segmental duplications on chromosome 1.

Predicted properties

Properties of NBPF16 that were predicted using bioinformatics tools:

• Molecular weight: 76 kD
• Isoelectric point: 4.43
• Post-translational modification: none predicted.
• No predicted signal peptide or signal peptide cleavage site.
• No interacting proteins or binding partners.

Expression

There is little to no expression data available for the gene, but most indications point to it being ubiquitously expressed throughout the body.

Homology

Orthologs

There exists no great orthologs outside of primates. These orthologs were gathered from BLAT. and BLAST searches

Paralogs

Due to there being 21 other members of the NBPF gene family, there are 21 paralogs of NBPF16. They all show high conservation and repetitive structures.

References

1. ^ GRCh38: Ensembl release 89: ENSG00000266338 – Ensembl, May 2017
2. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
3. "Entrez Gene: NBPF16 neuroblastoma breakpoint family, member 16". Retrieved 13 May 2009.
4. "SDSC Biology Workbench". San Diego Supercomputer Center. Retrieved 13 May 2009.
5. ^ Vandepoele K, Van Roy N, Staes K, Speleman F, van Roy F (August 2005). "A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution". Molecular Biology and Evolution. 22 (11): 2265–2274. doi:10.1093/molbev/msi222. PMID 16079250.
6. Brendel V, Bucher P, Nourbakhsh IR, Blaisdell BE, Karlin S (March 1992). "Methods and algorithms for statistical analysis of protein sequences". Proceedings of the National Academy of Sciences of the United States of America. 89 (6): 2002–6. Bibcode:1992PNAS...89.2002B. doi:10.1073/pnas.89.6.2002. PMC 48584. PMID 1549558.
7. "PI Program (Isoelectric Point Prediction)". Archived from the original on 26 October 2008.
8. Bendtsen JD, Nielsen H, von Heijne G, Brunak S (July 2004). "Improved prediction of signal peptides: SignalP 3.0". Journal of Molecular Biology. 340 (4): 783–95. CiteSeerX 10.1.1.165.2784. doi:10.1016/j.jmb.2004.05.028. PMID 15223320.
9. "BLAT Search Genome". Retrieved 13 May 2009.
10. "BLAST". Retrieved 13 May 2009.

Further reading

• August 2006, Ker Than 31 (31 August 2006). "Brain Gene May Help Make Us Human". livescience.com. Retrieved 23 April 2020.{{cite web}}: CS1 maint: numeric names: authors list (link)

• Genes on human chromosome 1
• Human proteins