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Protoporphyrinogen oxidase

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(Redirected from PPO herbicide)
PPOX
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

3NKS, 4IVM, 4IVO

Identifiers
AliasesPPOX, PPO, V290M, VP, protoporphyrinogen oxidase
External IDsOMIM: 600923; MGI: 104968; HomoloGene: 262; GeneCards: PPOX; OMA:PPOX - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)
Chromosome 1 (human)Genomic location for PPOXGenomic location for PPOX
Band1q23.3Start161,166,056 bp
End161,178,013 bp
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)
Chromosome 1 (mouse)Genomic location for PPOXGenomic location for PPOX
Band1|1 H3Start171,103,563 bp
End171,108,760 bp
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right uterine tube

  • olfactory zone of nasal mucosa

  • epithelium of bronchus

  • right hemisphere of cerebellum

  • bronchial epithelial cell

  • left ovary

  • anterior pituitary

  • right ovary

  • granulocyte

  • canal of the cervix
Top expressed in
  • fetal liver hematopoietic progenitor cell

  • granulocyte

  • neural layer of retina

  • tibiofemoral joint

  • human fetus

  • right kidney

  • saccule

  • yolk sac

  • genital tubercle

  • neural tube
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5498

19044

Ensembl

ENSG00000143224

ENSMUSG00000062729

UniProt

P50336

P51175

RefSeq (mRNA)
NM_000309
NM_001122764
NM_001350128
NM_001350129
NM_001350130

NM_001350131
NM_001365398
NM_001365399
NM_001365400
NM_001365401

NM_008911

RefSeq (protein)
NP_000300
NP_001116236
NP_001337057
NP_001337058
NP_001337059

NP_001337060

NP_032937

Location (UCSC)Chr 1: 161.17 – 161.18 MbChr 1: 171.1 – 171.11 Mb
PubMed search
Wikidata
View/Edit HumanView/Edit Mouse
protoporphyrinogen oxidase
Heme synthesis—note that some reactions occur in the cytoplasm and some in the mitochondrion (yellow)
Identifiers
EC no.1.3.3.4
CAS no.53986-32-6
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDB PDBe PDBsum
Gene OntologyAmiGO / QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins

Protoporphyrinogen oxidase or protox is an enzyme that in humans is encoded by the PPOX gene.

Protoporphyrinogen oxidase is responsible for the seventh step in biosynthesis of protoporphyrin IX. This porphyrin is the precursor to hemoglobin, the oxygen carrier in animals, and chlorophyll, the dye in plants. The enzyme catalyzes the dehydrogenation (removal of hydrogen atoms) of protoporphyrinogen IX (the product of the sixth step in the production of heme) to form protoporphyrin IX. One additional enzyme must modify protoporphyrin IX before it becomes heme. Inhibition of this enzyme is a strategy used in certain herbicides.

Gene

The PPOX gene is located on the long (q) arm of chromosome 1 at position 22, from base pair 157,949,266 to base pair 157,954,082.

Function

This gene encodes the penultimate enzyme of heme biosynthesis, which catalyzes the 6-electron oxidation of protoporphyrinogen IX to form protoporphyrin IX. This protein is a flavoprotein associated with the outer surface of the inner mitochondrial membrane.

Heme biosynthetic pathway

The following genes encode enzymes that catalyze the various steps in the heme biosynthetic pathway:

  • ALAD: aminolevulinate, delta-, dehydratase
  • ALAS1: aminolevulinate, delta-, synthase 1
  • ALAS2: aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia)
  • CPOX: coproporphyrinogen oxidase
  • FECH: ferrochelatase (protoporphyria)
  • HMBS: hydroxymethylbilane synthase
  • PPOX: protoporphyrinogen oxidase
  • UROD: uroporphyrinogen decarboxylase
  • UROS: uroporphyrinogen III synthase (congenital erythropoietic porphyria)

Clinical significance

Variegate porphyria is caused by mutations in the PPOX gene. More than 100 mutations that can cause variegate porphyria have been identified in the PPOX gene. One mutation, a substitution of the amino acid tryptophan for arginine at position 59 (also written as Arg59Trp or R59W), is found in about 95 percent of South African families with variegate porphyria. Mutations in the PPOX gene reduce the activity of the enzyme made by the gene, allowing byproducts of heme production to build up in the body. This buildup, in combination with nongenetic factors (such as certain drugs, alcohol and dieting), causes this type of porphyria.

Inhibitors as herbicides

Inhibition of protoporphyrinogen oxidase is a mechanism of action for several commercial herbicides including the nitrophenyl ethers acifluorfen and fomesafen and the pyrimidinediones butafenacil and saflufenacil. The visible symptoms of treatment are chlorosis and desiccation. The damage is caused by an accumulation of protoporphyrin IX in the plant cells by inhibiting protox within the tetrapyrrole biosynthesis pathway. This is a potent photosensitizer which activates oxygen, leading to lipid peroxidation. Both light and oxygen are required for this process to kill the plant.

See also

References

  1. ^ GRCh38: Ensembl release 89: ENSG00000143224Ensembl, May 2017
  2. ^ GRCm38: Ensembl release 89: ENSMUSG00000062729Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Taketani S, Inazawa J, Abe T, Furukawa T, Kohno H, Tokunaga R, et al. (October 1995). "The human protoporphyrinogen oxidase gene (PPOX): organization and location to chromosome 1". Genomics. 29 (3): 698–703. doi:10.1006/geno.1995.9949. PMID 8575762.
  6. Frank J, McGrath JA, Poh-Fitzpatrick MB, Hawk JL, Christiano AM (July 1999). "Mutations in the translation initiation codon of the protoporphyrinogen oxidase gene underlie variegate porphyria". Clinical and Experimental Dermatology. 24 (4): 296–301. doi:10.1046/j.1365-2230.1999.00484.x. PMID 10457135. S2CID 40509390.
  7. ^ "Entrez Gene: PPOX protoporphyrinogen oxidase".
  8. Brzezowski P, Ksas B, Havaux M, Grimm B, Chazaux M, Peltier G, et al. (2019-05-03). "The function of PROTOPORPHYRINOGEN IX OXIDASE in chlorophyll biosynthesis requires oxidised plastoquinone in Chlamydomonas reinhardtii". Communications Biology. 2 (1): 159. doi:10.1038/s42003-019-0395-5. PMC 6499784. PMID 31069268.
  9. Dayan FE, Reddy KN, Duke SO (1999). "Structure-Activity Relationships of Diphenyl Ethers and Other Oxygen-Bridged Protoporphyrinogen Oxidase Inhibitors". Peroxidizing Herbicides. pp. 141–161. doi:10.1007/978-3-642-58633-0_5. ISBN 978-3-642-63674-5.
  10. Nagano E (1999). "Herbicidal Efficacy of Protoporphyrinogen Oxidase Inhibitors". Peroxidizing Herbicides. pp. 293–302. doi:10.1007/978-3-642-58633-0_11. ISBN 978-3-642-63674-5.
  11. Dayan FE, Duke SO (2010). "Protoporphyrinogen Oxidase-Inhibiting Herbicides". Hayes' Handbook of Pesticide Toxicology. pp. 1733–1751. doi:10.1016/B978-0-12-374367-1.00081-1. ISBN 9780123743671.

Further reading

External links

  • PDBe-KB provides an overview of all the structure information available in the PDB for Human Protoporphyrinogen oxidase
Protein: cell membrane proteins (other than Cell surface receptor, enzymes, and cytoskeleton)
Arrestin
Membrane-spanning 4A
Myelin
Pulmonary surfactant
Tetraspanin
Other/ungrouped
see also other cell membrane protein disorders
Enzymes involved in the metabolism of heme and porphyrin
Porphyrin biosynthesis
early mitochondrial:
cytosolic:
late mitochondrial:
Heme degradation
to bile
spleen:
liver:
Oxidoreductases: CH–CH oxidoreductases (EC 1.3)
1.3.1: NAD/NADP acceptor
1.3.3: Oxygen acceptor
1.3.5: Quinone
1.3.99: Other acceptors
Enzymes
Activity
Regulation
Classification
Kinetics
Types
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