 | |
| Content | |
|---|---|
| Description | The Plant Ontology |
| Data types captured | Anatomy and development of plants |
| Organisms | Viridiplantae |
| Contact | |
| Primary citation | Walls et al. (2012) |
| Release date | 2002 |
| Access | |
| Data format | OBO and OWL |
| Website | http://plantontology.org |
| Download URL | http://purl.obolibrary.org/obo/po.owl |
| Sparql endpoint | http://sparql.hegroup.org/sparql |
| Miscellaneous | |
| License | CC BY 4.0 |
Plant ontology (PO) is a collection of ontologies developed by the Plant Ontology Consortium. These ontologies describe anatomical structures and growth and developmental stages across Viridiplantae. The PO is intended for multiple applications, including genetics, genomics, phenomics, and development, taxonomy and systematics, semantic applications and education.
Project Members
- Oregon State University
- New York Botanical Garden
- L. H. Bailey Hortorium at Cornell University
- Ensembl
- SoyBase
- SSWAP
- SGN
- Gramene
- The Arabidopsis Information Resource (TAIR)
- MaizeGDB
- University of Missouri at St. Louis
- Missouri Botanical Garden
See also
References
- ^ Walls, R. L.; Athreya, B.; Cooper, L.; Elser, J.; Gandolfo, M. A.; Jaiswal, P.; Mungall, C. J.; Preece, J.; Rensing, S.; Smith, B.; Stevenson, D. W. (2012). "Ontologies as integrative tools for plant science". American Journal of Botany. 99 (8): 1263–1275. doi:10.3732/ajb.1200222. PMC 3492881. PMID 22847540.
- ^ The Plant Ontology Consortium, C. (2002). "The Plant Ontology™ Consortium and Plant Ontologies". Comparative and Functional Genomics. 3 (2): 137–142. doi:10.1002/cfg.154. PMC 2447263. PMID 18628842.
- Ilic, Katica (2008). Albert, Burger (ed.). Plant Structure Ontology (PSO) - A morphological and anatomical ontology of flowering plants. Springer. pp. 27–42. Retrieved August 22, 2012.
- Avraham, S.; Tung, C. -W.; Ilic, K.; Jaiswal, P.; Kellogg, E. A.; McCouch, S.; Pujar, A.; Reiser, L.; Rhee, S. Y.; Sachs, M. M.; Schaeffer, M.; Stein, L.; Stevens, P.; Vincent, L.; Zapata, F.; Ware, D. (2007). "The Plant Ontology Database: A community resource for plant structure and developmental stages controlled vocabulary and annotations". Nucleic Acids Research. 36 (Database issue): D449–D454. doi:10.1093/nar/gkm908. PMC 2238838. PMID 18194960.
- Ilic, K.; Kellogg, E. A.; Jaiswal, P.; Zapata, F.; Stevens, P. F.; Vincent, L. P.; Avraham, S.; Reiser, L.; Pujar, A.; Sachs, M. M.; Whitman, N. T.; McCouch, S. R.; Schaeffer, M. L.; Ware, D. H.; Stein, L. D.; Rhee, S. Y. (2006). "The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant". Plant Physiology. 143 (2): 587–599. doi:10.1104/pp.106.092825. PMC 1803752. PMID 17142475.
- Pujar, A.; Jaiswal, P.; Kellogg, E. A.; Ilic, K.; Vincent, L.; Avraham, S.; Stevens, P.; Zapata, F.; Reiser, L.; Rhee, S. Y.; Sachs, M. M.; Schaeffer, M.; Stein, L.; Ware, D.; McCouch, S. (2006). "Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology". Plant Physiology. 142 (2): 414–428. doi:10.1104/pp.106.085720. PMC 1586063. PMID 16905665.
- Jaiswal, P.; Avraham, S.; Ilic, K.; Kellogg, E. A.; McCouch, S.; Pujar, A.; Reiser, L.; Rhee, S. Y.; Sachs, M. M.; Schaeffer, M.; Stein, L.; Stevens, P.; Vincent, L.; Ware, D.; Zapata, F. (2005). "Plant Ontology (PO): A Controlled Vocabulary of Plant Structures and Growth Stages". Comparative and Functional Genomics. 6 (7–8): 388–397. doi:10.1002/cfg.496. PMC 2447502. PMID 18629207.
- "Information Overload in the Era of 'Big Data'". Science Daily. Retrieved 23 August 2012.
External links
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