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SFTPA1
Identifiers
Aliases	SFTPA1, COLEC4, PSAP, PSP-A, PSPA, SFTP1, SFTPA1B, SP-A, SP-A1, SPA, SPA1, surfactant protein A1, SP-A1 beta, SP-A1 delta, SP-A1 gamma, SP-A1 epsilon, ILD1
External IDs	OMIM: 178630; MGI: 109518; HomoloGene: 3946; GeneCards: SFTPA1; OMA:SFTPA1 - orthologs
Gene location (Human) Chr. Chromosome 10 (human) Band 10q22.3 Start 79,610,939 bp End 79,615,455 bp
Gene location (Mouse) Chr. Chromosome 14 (mouse) Band 14 B|14 22.36 cM Start 40,853,739 bp End 40,858,409 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in right lung upper lobe of left lung apex of heart gonad islet of Langerhans gastrocnemius muscle left ventricle right lobe of thyroid gland appendix sural nerve Top expressed in right lung lobe left lung left lung lobe trachea alveolar duct sexually immature organism pulmonary alveolus carotid body aorta liver More reference expression data BioGPS n/a
Gene ontology Molecular function protein binding carbohydrate binding lipid transporter activity lipopolysaccharide binding monosaccharide binding Cellular component extracellular region clathrin-coated endocytic vesicle collagen lamellar granule endoplasmic reticulum membrane extracellular space multivesicular body rough endoplasmic reticulum Biological process respiratory gaseous exchange by respiratory system lipid transport toll-like receptor signaling pathway opsonization surfactant homeostasis positive regulation of phagocytosis developmental process Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 653509 20387 Ensembl ENSG00000122852 ENSMUSG00000021789 UniProt Q8IWL2 P35242 Q9CQI1 RefSeq (mRNA) NM_001093770 NM_001164644 NM_001164645 NM_001164646 NM_001164647 NM_005411 NM_023134 RefSeq (protein) NP_001087239 NP_001158116 NP_001158117 NP_001158118 NP_001158119 NP_005402 NP_075623 Location (UCSC) Chr 10: 79.61 – 79.62 Mb Chr 14: 40.85 – 40.86 Mb PubMed search
Wikidata
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Surfactant protein A1 (SP-A1), also known as Pulmonary surfactant-associated protein A1 (PSP-A) is a protein that in humans is encoded by the SFTPA1 gene.

Summary

SP-A1 is primarily synthesised in type II alveolar cells in the lung, as part of a complex of lipids and proteins known as pulmonary surfactant. The function of this complex is to reduce surface tension in the alveoli and prevent their collapse during expiration. The protein component of surfactant helps in the modulation of the innate immune response, and inflammatory processes.

SP-A1 is a member of a subfamily of C-type lectins called collectins. Together with SP-A2, they are the most abundant proteins of pulmonary surfactant. SP-A1 binds to the carbohydrates found in the surface of several microorganisms and helps in the defense against respiratory pathogens.

Surfactant homeostasis is critical for breathing (and thus survival) in the prematurely born infant, but also for maintaining lung health, and normal lung function throughout life. Changes in the amount or composition of surfactant can alter its function and are associated with respiratory diseases.

SFTPA1 expression

The lung is the main site of SFTPA1 synthesis, but SFTPA1 mRNA expression has also been detected in the trachea, prostate, pancreas, thymus, colon, eye, salivary gland and other tissues. Using specific monoclonal antibodies for Surfactant protein A, the protein can be detected in lung alveolar type II pneumocytes, club cells, and alveolar macrophages, but no extrapulmonary SP-A immunoreactivity was observed.

Gene

SFTPA1 is located in the long arm q of chromosome 10, close to SFTPA2. The SFTPA1 gene is 4505 base pairs in length, and 94% similar to SFTPA2. The structure of SFTPA1 consists of four coding exons (I-IV), and several 5'UTR untranslated exons (A, B, B', C, C', D, D'). The expression of SFTPA1 is regulated by cellular factors including proteins, small RNAs (microRNAs), glucocorticoids, etc. Its expression is also regulated by epigenetic and environmental factors.

Differences in the SFTPA1 gene sequence at the coding region determine SP-A genetic variants or haplotypes among individuals. More than 30 variants have been identified and characterized for SFTPA1 (and SFTPA2) in the population. SFTPA1 variants result from nucleotide changes in the codons of amino acids 19, 50, 62, 133, and 219. Two of these do not modify the SP-A1 protein sequence (amino acids 62 and 133), whereas the rest result in amino acid substitutions (amino acid 19, 50, 133, and 219). Four SP-A1 variants (6A, 6A, 6A, 6A) are in higher frequency in the general population. The most frequently found variant is 6A.

Structure

Surfactant protein A (SP-A) is a protein of 248 amino acids usually found in large oligomeric structures. The mature SP-A1 monomer is a 35kDa protein that differs from SP-A2 in four amino acids at the coding region. The structure of SP-A1 monomers consists of four domains: an N-terminal, a collagen-like domain, a neck region, and a carbohydrate recognition domain. The C-terminal carbohydrate recognition domain (CRD) allows binding to various types of microorganisms and molecules. The amino acid differences that distinguish between SP-A1 and SP-A2 genes and between their corresponding variants are located at the collagen-like domain. The amino acid differences that distinguish among SFTPA1 variants are located both at the carbohydrate recognition and the collagen-like domains.

SP-A1 monomers group with other SP-A1 or SP-A2 monomers in trimeric structural subunits of 105kDa. Six of these structures group in 630 kDa structures that resemble flower bouquets. These oligomers contain a total of eighteen SP-A1 and/or SP-A2 monomers.

Functions

• Binding of pathogens, allergens, and other molecules
• Increasing phagocytosis and chemotaxis of alveolar macrophages
• Induction of proliferation of immune cells
• Stimulation of proinflammatory cytokine production
• Modulation of the generation of reactive oxygen species
• Serving as a hormone in parturition
• Maintaining the structure of tubular myelin (an extracellular form of surfactant)

Innate immunity

The role of SFTPA1 in innate immunity has been extensively studied. SP-A has the ability to bind and agglutinate bacteria, fungi, viruses, and other non-biological antigens. Some of the functions by which both SFTPA1 and SFTPA2 contribute to innate immunity include:

• opsonization of bacteria for phagocytosis by alveolar macrophages
• recruitment of monocytes and neutrophils to the site of inflammation/infection
• enhancement of pathogen-killing mechanisms: phagocytosis, release of reactive oxygen species, release of nitric oxide
• control of cytokine production by immune cells
• transition of innate immunity to adaptive immunity (by interaction with cell surface receptors of dendritic cells to allow antigen presentation)

Environmental insults such as air pollution, and exposure to high concentrations of ozone and particulate matter can affect SP-A expression and function, via mechanisms that involve epigenetic regulation of SFTPA1 expression.

Clinical significance

Deficiency in SP-A levels is associated with infant respiratory distress syndrome in prematurely born infants with developmental insufficiency of surfactant production and structural immaturity in the lungs.

SFTPA1 genetic variants, SNPs, haplotypes, and other genetic variations have been associated with acute and chronic lung disease in several populations of neonates, children, and adults. Genetic variations in SFTPA1 have been associated with susceptibility to idiopathic pulmonary fibrosis, a lung disease characterized by shortness of breath, pulmonary infiltrates and inflammation that results in acute lung damage with subsequent scarring of lung tissue. Genetic variations in SFTPA1 are also a cause of susceptibility to respiratory distress syndrome in premature infants, a lung disease characterized by deficient gas exchange, diffuse atelectasis, high-permeability lung edema and fibrin-rich alveolar deposits "surfactant protein A1".. The ratio of SP-A1 to total SP-A has been correlated with lung disease (e.g. asthma, cystic fibrosis) and aging. Methylation of SFTPA1 promoter sequences has also been found in lung cancer tissue.

SFTPA1 mRNA transcript variants

Gene regulation

Gene expression of SFTPA1 is regulated at different levels including gene transcription, post-transcriptional processing, stability and translation of mature mRNA. One of the important features of human surfactant protein A mRNAs is that they have a variable five prime untranslated region (5'UTR) generated from splicing variation of exons A, B, C, and D. At least 10 forms of human SFTPA1 and SFTPA2 5'UTRs have been identified that differ in nucleotide sequence, length, and relative amount. Specific SFTPA1 or SFTPA2 5'UTRs have also been characterized. Some SFTPA1 specific 5'UTRs include exons B' or C. These two exons contain upstream AUGs (uAUGs) that can potentially act as sites for translation initiation (see eukaryotic translation), affecting protein translation and SFTPA1 relative content. The majority of SFTPA1 transcripts lack exon B, a sequence implicated in transcription and translation enhancement, indicating a differential regulation of SFTPA1 and SFTPA2 expression. The AD' form is the most represented among SFTPA1 transcripts (81%), and experimental work has shown that this sequence can stabilize mRNA and enhance translation, but the mechanisms implicated in this regulation are still under investigation. While differences at the 5'UTR are shown to regulate both transcription and translation, polymorphisms at the 3'UTR of SP-A1 variants are shown to primarily, differentially affect translation efficiency via mechanisms that involve binding of proteins and/or . The impact of this regulation on SFTPA1 and SFTPA2 protein levels may contribute to individual differences in susceptibility to lung disease. Environmental insults and pollutants also affect SFTPA1 expression. Exposure of lung cells to particulate matter affects splicing of 5'UTR exons of SFTPA1 transcripts. Pollutants and viral infections also affect SFTPA1 translation mechanisms (see eukaryotic translation, translation (biology)).

Notes

The 2013 version of this article was updated by an external expert under a dual publication model. The corresponding academic peer reviewed article was published in Gene and can be cited as: Joanna Floros (1 December 2013). "Genetic complexity of the human surfactant-associated proteins SP-A1 and SP-A2". Gene. 531 (2): 126–132. doi:10.1016/J.GENE.2012.09.111. PMC 3570704. PMID 23069847.

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Further reading

• Lu J (Jun 1997). "Collectins: collectors of microorganisms for the innate immune system". BioEssays. 19 (6): 509–18. doi:10.1002/bies.950190610. PMID 9204768. S2CID 23565862.
• Floros J, Hoover RR (Nov 1998). "Genetics of the hydrophilic surfactant proteins A and D". Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease. 1408 (2–3): 312–22. doi:10.1016/S0925-4439(98)00077-5. PMID 9813381.
• Khubchandani KR, Snyder JM (Jan 2001). "Surfactant protein A (SP-A): the alveolus and beyond". FASEB Journal. 15 (1): 59–69. CiteSeerX 10.1.1.326.5508. doi:10.1096/fj.00-0318rev. PMID 11149893. S2CID 1934315.
• Katyal SL, Singh G, Locker J (Apr 1992). "Characterization of a second human pulmonary surfactant-associated protein SP-A gene". American Journal of Respiratory Cell and Molecular Biology. 6 (4): 446–52. doi:10.1165/ajrcmb/6.4.446. PMID 1372511.
• Childs RA, Wright JR, Ross GF, Yuen CT, Lawson AM, Chai W, Drickamer K, Feizi T (May 1992). "Specificity of lung surfactant protein SP-A for both the carbohydrate and the lipid moieties of certain neutral glycolipids". The Journal of Biological Chemistry. 267 (14): 9972–9. doi:10.1016/S0021-9258(19)50187-9. PMID 1577827.
• Endo H, Oka T (Jun 1991). "An immunohistochemical study of bronchial cells producing surfactant protein A in the developing human fetal lung". Early Human Development. 25 (3): 149–56. doi:10.1016/0378-3782(91)90111-F. PMID 1935736.
• Voss T, Melchers K, Scheirle G, Schäfer KP (Jan 1991). "Structural comparison of recombinant pulmonary surfactant protein SP-A derived from two human coding sequences: implications for the chain composition of natural human SP-A". American Journal of Respiratory Cell and Molecular Biology. 4 (1): 88–94. doi:10.1165/ajrcmb/4.1.88. PMID 1986781.
• Haagsman HP, White RT, Schilling J, Lau K, Benson BJ, Golden J, Hawgood S, Clements JA (Dec 1989). "Studies of the structure of lung surfactant protein SP-A". The American Journal of Physiology. 257 (6 Pt 1): L421–9. doi:10.1152/ajplung.1989.257.6.L421. PMID 2610270.
• Fisher JH, Kao FT, Jones C, White RT, Benson BJ, Mason RJ (Jun 1987). "The coding sequence for the 32,000-dalton pulmonary surfactant-associated protein A is located on chromosome 10 and identifies two separate restriction-fragment-length polymorphisms". American Journal of Human Genetics. 40 (6): 503–11. PMC 1684155. PMID 2884868.
• White RT, Damm D, Miller J, Spratt K, Schilling J, Hawgood S, Benson B, Cordell B (1985). "Isolation and characterization of the human pulmonary surfactant apoprotein gene". Nature. 317 (6035): 361–3. Bibcode:1985Natur.317..361W. doi:10.1038/317361a0. PMID 2995821. S2CID 4357498.
• Floros J, Steinbrink R, Jacobs K, Phelps D, Kriz R, Recny M, Sultzman L, Jones S, Taeusch HW, Frank HA (Jul 1986). "Isolation and characterization of cDNA clones for the 35-kDa pulmonary surfactant-associated protein". The Journal of Biological Chemistry. 261 (19): 9029–33. doi:10.1016/S0021-9258(19)84483-6. PMID 3755136.
• Schaeffer E, Guillou F, Part D, Zakin MM (Nov 1993). "A different combination of transcription factors modulates the expression of the human transferrin promoter in liver and Sertoli cells". The Journal of Biological Chemistry. 268 (31): 23399–408. doi:10.1016/S0021-9258(19)49476-3. PMID 8226864.
• Khoor A, Gray ME, Hull WM, Whitsett JA, Stahlman MT (Sep 1993). "Developmental expression of SP-A and SP-A mRNA in the proximal and distal respiratory epithelium in the human fetus and newborn". The Journal of Histochemistry and Cytochemistry. 41 (9): 1311–9. doi:10.1177/41.9.8354874. PMID 8354874.
• Strayer DS, Yang S, Jerng HH (Sep 1993). "Surfactant protein A-binding proteins. Characterization and structures". The Journal of Biological Chemistry. 268 (25): 18679–84. doi:10.1016/S0021-9258(17)46683-X. PMID 8360162.
• Kölble K, Lu J, Mole SE, Kaluz S, Reid KB (Aug 1993). "Assignment of the human pulmonary surfactant protein D gene (SFTP4) to 10q22-q23 close to the surfactant protein A gene cluster". Genomics. 17 (2): 294–8. doi:10.1006/geno.1993.1324. PMID 8406480.
• deMello DE, Heyman S, Phelps DS, Floros J (May 1993). "Immunogold localization of SP-A in lungs of infants dying from respiratory distress syndrome". The American Journal of Pathology. 142 (5): 1631–40. PMC 1886897. PMID 8494055.
• Chroneos ZC, Abdolrasulnia R, Whitsett JA, Rice WR, Shepherd VL (Jul 1996). "Purification of a cell-surface receptor for surfactant protein A". The Journal of Biological Chemistry. 271 (27): 16375–83. doi:10.1074/jbc.271.27.16375. PMID 8663107.
• Planer BC, Ning Y, Kumar SA, Ballard PL (Aug 1997). "Transcriptional regulation of surfactant proteins SP-A and SP-B by phorbol ester". Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression. 1353 (2): 171–9. doi:10.1016/S0167-4781(97)00070-5. PMID 9294011.

• Genes on human chromosome 10
• Misplaced Pages articles with corresponding academic peer reviewed articles
• Misplaced Pages articles with corresponding articles published in Gene