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TBC1D4

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Protein-coding gene in the species Homo sapiens

TBC1D4
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

3QYB

Identifiers
AliasesTBC1D4, AS160, NIDDM5, TBC1 domain family member 4
External IDsOMIM: 612465; MGI: 2429660; HomoloGene: 45451; GeneCards: TBC1D4; OMA:TBC1D4 - orthologs
Gene location (Human)
Chromosome 13 (human)
Chr.Chromosome 13 (human)
Chromosome 13 (human)Genomic location for TBC1D4Genomic location for TBC1D4
Band13q22.2Start75,283,503 bp
End75,482,169 bp
Gene location (Mouse)
Chromosome 14 (mouse)
Chr.Chromosome 14 (mouse)
Chromosome 14 (mouse)Genomic location for TBC1D4Genomic location for TBC1D4
Band14|14 E2.3Start101,679,796 bp
End101,846,627 bp
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Skeletal muscle tissue of rectus abdominis

  • renal medulla

  • thoracic diaphragm

  • vastus lateralis muscle

  • parotid gland

  • Skeletal muscle tissue of biceps brachii

  • caput epididymis

  • corpus epididymis

  • right adrenal cortex

  • left adrenal gland
Top expressed in
  • temporal muscle

  • sternocleidomastoid muscle

  • digastric muscle

  • interventricular septum

  • extraocular muscle

  • parotid gland

  • lymph node

  • mesenteric lymph nodes

  • intercostal muscle

  • cerebellar vermis
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

9882

210789

Ensembl

ENSG00000136111

ENSMUSG00000033083

UniProt

O60343

Q8BYJ6

RefSeq (mRNA)

NM_001286658
NM_001286659
NM_014832

NM_001081278
NM_173380

RefSeq (protein)

NP_001273587
NP_001273588
NP_055647

NP_001074747
NP_001391600
NP_001391601
NP_001391602
NP_001391603

Location (UCSC)Chr 13: 75.28 – 75.48 MbChr 14: 101.68 – 101.85 Mb
PubMed search
Wikidata
View/Edit HumanView/Edit Mouse

AS160 (Akt substrate of 160 kDa), which was originally known as TBC1 domain family member 4 (TBC1D4), is a Rab GTPase-activating protein that in humans is encoded by the TBC1D4 gene.

The 160 kD protein product was first discovered in a screen for novel substrates of the serine-threonine kinase Akt2, which phosphorylates AS160 at Thr-642 and Ser-588 after insulin stimulation. Insulin stimulation of fat and muscle cells results in translocation of the glucose transporter GLUT4 to the plasma membrane, and this translocation process is dependent on phosphorylation of AS160. The role of AS160 in GLUT4 translocation is mediated by its GTPase activating domain and interactions with Rab proteins in vesicle formation, increasing GLUT4 translocation when its GTPase activity is inhibited by Akt phosphorylation. Specifically, this inhibition activates RAB2A, RAB8A, RAB10 and RAB14.

AS160 also contains a calmodulin-binding domain, and this domain mediates phosphorylation-independent glucose uptake in muscle cells.

Isoforms

The TBC1D4 gene has two isoforms - a long isoform expressed almost exclusively in skeletal and cardiac muscle, and a short isoform with more widespread expression.

Pathogenic mutations

A nonsense p.Arg684Ter variant in the TBC1D4 gene has been identified in the Greenlandic Inuit population that is associated with increased risk of type II diabetes. The variant mainly affects individuals with two copies of the mutation, indicating recessive inheritance. Although the mutation does not effect the short isoform of the protein, it introduces a premature stop codon in the long isoform, resulting in the absence of the long isoform protein in muscle tissue.

Homozygous carriers of the p.Arg684Ter allele have lower concentrations of fasting plasma glucose and insulin. They also have a markedly increased risk of Type II Diabetes — individuals with two mutant genes have about 10 times the chance of contracting Type II diabetes (odds ratio = 10.3) compared to noncarriers. Approximately 3.8% of Greenlanders are homozygous for the mutation, which is estimated to be responsible for approximately 10% of Type II Diabetes cases in Greenland.

References

  1. ^ GRCh38: Ensembl release 89: ENSG00000136111Ensembl, May 2017
  2. ^ GRCm38: Ensembl release 89: ENSMUSG00000033083Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Sakamoto K, Holman GD (July 2008). "Emerging role for AS160/TBC1D4 and TBC1D1 in the regulation of GLUT4 traffic". American Journal of Physiology. Endocrinology and Metabolism. 295 (1): E29 – E37. doi:10.1152/ajpendo.90331.2008. PMC 2493596. PMID 18477703.
  6. Kurihara LJ, Semenova E, Miller W, Ingram RS, Guan XJ, Tilghman SM (February 2002). "Candidate genes required for embryonic development: a comparative analysis of distal mouse chromosome 14 and human chromosome 13q22". Genomics. 79 (2): 154–161. CiteSeerX 10.1.1.16.1099. doi:10.1006/geno.2002.6692. PMID 11829485.
  7. Kane S, Sano H, Liu SC, Asara JM, Lane WS, Garner CC, et al. (June 2002). "A method to identify serine kinase substrates. Akt phosphorylates a novel adipocyte protein with a Rab GTPase-activating protein (GAP) domain". The Journal of Biological Chemistry. 277 (25): 22115–22118. doi:10.1074/jbc.C200198200. PMID 11994271.
  8. Matsumoto Y, Imai Y, Lu Yoshida N, Sugita Y, Tanaka T, Tsujimoto G, et al. (August 2004). "Upregulation of the transcript level of GTPase activating protein KIAA0603 in T cells from patients with atopic dermatitis". FEBS Letters. 572 (1–3): 135–140. Bibcode:2004FEBSL.572..135M. doi:10.1016/j.febslet.2004.07.023. PMID 15304337.
  9. "Entrez Gene: TBC1D4 TBC1 domain family, member 4".
  10. Sano H, Kane S, Sano E, Mîinea CP, Asara JM, Lane WS, et al. (April 2003). "Insulin-stimulated phosphorylation of a Rab GTPase-activating protein regulates GLUT4 translocation". The Journal of Biological Chemistry. 278 (17): 14599–14602. doi:10.1074/jbc.C300063200. PMID 12637568.
  11. Kane S, Sano H, Liu SC, Asara JM, Lane WS, Garner CC, et al. (June 2002). "A method to identify serine kinase substrates. Akt phosphorylates a novel adipocyte protein with a Rab GTPase-activating protein (GAP) domain". The Journal of Biological Chemistry. 277 (25): 22115–22118. doi:10.1074/jbc.C200198200. PMID 11994271.
  12. Sano H, Kane S, Sano E, Mîinea CP, Asara JM, Lane WS, et al. (April 2003). "Insulin-stimulated phosphorylation of a Rab GTPase-activating protein regulates GLUT4 translocation". The Journal of Biological Chemistry. 278 (17): 14599–14602. doi:10.1074/jbc.C300063200. PMID 12637568.
  13. Mîinea CP, Sano H, Kane S, Sano E, Fukuda M, Peränen J, et al. (October 2005). "AS160, the Akt substrate regulating GLUT4 translocation, has a functional Rab GTPase-activating protein domain". The Biochemical Journal. 391 (Pt 1): 87–93. doi:10.1042/BJ20050887. PMC 1237142. PMID 15971998.
  14. Kramer HF, Taylor EB, Witczak CA, Fujii N, Hirshman MF, Goodyear LJ (December 2007). "Calmodulin-binding domain of AS160 regulates contraction- but not insulin-stimulated glucose uptake in skeletal muscle". Diabetes. 56 (12): 2854–2862. doi:10.2337/db07-0681. PMID 17717281.
  15. ^ Moltke I, Grarup N, Jørgensen ME, Bjerregaard P, Treebak JT, Fumagalli M, et al. (August 2014). "A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes". Nature. 512 (7513): 190–193. Bibcode:2014Natur.512..190M. doi:10.1038/nature13425. PMID 25043022.

Further reading

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