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CDK7
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 1UA2
Identifiers
Aliases	CDK7, CAK1, CDKN7, HCAK, MO15, STK1, p39MO15, CAK, cyclin-dependent kinase 7, cyclin dependent kinase 7
External IDs	OMIM: 601955; MGI: 102956; HomoloGene: 1363; GeneCards: CDK7; OMA:CDK7 - orthologs
Gene location (Human) Chr. Chromosome 5 (human) Band 5q13.2 Start 69,234,795 bp End 69,277,430 bp
Gene location (Mouse) Chr. Chromosome 13 (mouse) Band 13 D1|13 53.23 cM Start 100,839,139 bp End 100,867,447 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in placenta gonad islet of Langerhans testicle left testis olfactory zone of nasal mucosa right testis stromal cell of endometrium zone of skin skin of leg Top expressed in otic placode primitive streak abdominal wall renal corpuscle calvaria endocardial cushion morula vas deferens yolk sac migratory enteric neural crest cell More reference expression data BioGPS More reference expression data
Gene ontology Molecular function transferase activity protein kinase activity nucleotide binding ATP-dependent activity, acting on DNA transcription coactivator activity protein C-terminus binding protein binding androgen receptor binding RNA polymerase II CTD heptapeptide repeat kinase activity ATP binding kinase activity protein serine/threonine kinase activity cyclin-dependent protein serine/threonine kinase activity Cellular component nucleoplasm perinuclear region of cytoplasm nucleus cytoplasm cyclin-dependent protein kinase activating kinase holoenzyme complex transcription factor TFIIH holo complex transcription factor TFIIK complex Biological process termination of RNA polymerase I transcription androgen receptor signaling pathway regulation of cyclin-dependent protein serine/threonine kinase activity regulation of transcription, DNA-templated phosphorylation transcription initiation from RNA polymerase I promoter transcription elongation from RNA polymerase II promoter 7-methylguanosine mRNA capping transcription by RNA polymerase II transcription, DNA-templated cellular response to DNA damage stimulus cell division positive regulation of transcription, DNA-templated protein phosphorylation cell cycle transcription-coupled nucleotide-excision repair transcription initiation from RNA polymerase II promoter cell population proliferation positive regulation of transcription by RNA polymerase II snRNA transcription by RNA polymerase II nucleotide-excision repair, preincision complex assembly DNA repair protein stabilization G1/S transition of mitotic cell cycle G2/M transition of mitotic cell cycle transcription elongation from RNA polymerase I promoter Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 1022 12572 Ensembl ENSG00000134058 ENSG00000277273 ENSMUSG00000069089 UniProt P50613 Q03147 RefSeq (mRNA) NM_001799 NM_001324069 NM_001324070 NM_001324071 NM_001324072 NM_001324074 NM_001324075 NM_001324077 NM_001324078 NM_009874 RefSeq (protein) NP_001310998 NP_001310999 NP_001311000 NP_001311001 NP_001311003 NP_001311004 NP_001311006 NP_001311007 NP_001790 NP_034004 Location (UCSC) Chr 5: 69.23 – 69.28 Mb Chr 13: 100.84 – 100.87 Mb PubMed search
Wikidata
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Cyclin-dependent kinase 7, or cell division protein kinase 7, is an enzyme that in humans is encoded by the CDK7 gene.

The protein encoded by this gene is a member of the cyclin-dependent protein kinase (CDK) family. CDK family members are highly similar to the gene products of Saccharomyces cerevisiae cdc28, and Schizosaccharomyces pombe cdc2, and are known to be important regulators of cell cycle progression.

This protein forms a trimeric complex with cyclin H and MAT1, which functions as a Cdk-activating kinase (CAK). It is an essential component of the transcription factor TFIIH, that is involved in transcription initiation and DNA repair. This protein is thought to serve as a direct link between the regulation of transcription and the cell cycle.

Clinical significance e.g. cancer

Given that CDK7 is involved in two important regulation roles, it's expected that CDK7 regulation may play a role in cancerous cells. Cells from breast cancer tumors were found to have elevated levels of CDK7 and Cyclin H when compared to normal breast cells. It was also found that the higher levels were generally found in ER-positive breast cancer. Together, these findings indicate that CDK7 therapy might make sense for some breast cancer patients. Further confirming these findings, recent research indicates that inhibition of CDK7 may be an effective therapy for HER2-positive breast cancers, even overcoming therapeutic resistance. THZ1 was tested on HER2-positive breast cancer cells and exhibited high potency for the cells regardless of their sensitivity to HER2 inhibitors. This finding was demonstrated in vivo, where inhibition of HER2 and CDK7 resulted in tumor regression in therapeutically resistant HER2+ xenograft models.

Inhibitors

The growth suppressor p53 has been shown to interact with cyclin H both in vitro and in vivo. Addition of wild type p53 was found to heavily downregulated CAK activity, resulting in decreased phosphorylation of both CDK2 and CTD by CDK7. Mutant p53 was unable to downregulate CDK7 activity and mutant p21 had no effect on downregulation, indicating that p53 is responsible for negative regulation of CDK7.

In 2017 CT7001, an oral CDK7 inhibitor, started a phase 1 clinical trial.

THZ1 is an inhibitor for CDK7 that selectively forms a covalent bond with the CDK7-cycH-MAT1 complex. This selectivity stems from forming a bond at C312, which is unique to CDK7 within the CDK family. CDK12 and CDK13 could also be inhibited using THZ1 (but at higher concentrations) because they have similar structures in the region surrounding C312. It was found that treatment of 250 nM THZ1 was sufficient to inhibit global transcription and that cancer cell lines were sensitive to much lower concentrations, opening up further research into the efficacy of using THZ1 as a component of cancer therapy, as described above.

In renal cell carcinoma (RCC), the expression of CDK7 was significantly higher in the advanced stage tumors. Besides, the overall survival was significantly shorter in patients with higher CDK7 expression in the tumors. These results suggest that CDK7 may be a potential target for overcoming RCC.

Based on molecular docking results, Ligands-3, 5, 14, and 16 were screened among 17 different Pyrrolone-fused benzosuberene compounds as potent and specific inhibitors without any cross-reactivity against different CDK isoforms. Analysis of MD simulations and MM-PBSA studies, revealed the binding energy profiles of all the selected complexes. Selected ligands performed better than the experimental drug candidate (Roscovitine). Ligands-3 and 14 show specificity for CDK7. These ligands are expected to possess lower risk of side effects due to their natural origin.

In urothelial carcinoma (UC), CDK7 expression is increased in bladder cancer tissues, especially in patients with chemoresistance. CDK7 inhibition-related cancer stemness suppression is a potential therapeutic strategy for both chemonaïve and chemoresistant UC.

Interactions

Cyclin-dependent kinase 7 has been shown to interact with:

• Androgen receptor,
• Cyclin H,
• GTF2H1,
• MNAT1,
• P53,
• SUPT5H, and
• XPB.

See also

• Cyclin-dependent kinase
• CDK7 pathway

References

1. ^ ENSG00000277273 GRCh38: Ensembl release 89: ENSG00000134058, ENSG00000277273 – Ensembl, May 2017
2. ^ GRCm38: Ensembl release 89: ENSMUSG00000069089 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Fisher RP, Morgan DO (August 1994). "A novel cyclin associates with MO15/CDK7 to form the CDK-activating kinase". Cell. 78 (4): 713–24. doi:10.1016/0092-8674(94)90535-5. PMID 8069918. S2CID 2996948.
6. "Entrez Gene: CDK7 cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)".
7. Patel H, Abduljabbar R, Lai CF, Periyasamy M, Harrod A, Gemma C, et al. (December 2016). "Expression of CDK7, Cyclin H, and MAT1 Is Elevated in Breast Cancer and Is Prognostic in Estrogen Receptor-Positive Breast Cancer". Clinical Cancer Research. 22 (23): 5929–5938. doi:10.1158/1078-0432.CCR-15-1104. PMC 5293170. PMID 27301701.
8. Sun B, Mason S, Wilson RC, Hazard SE, Wang Y, Fang R, et al. (January 2020). "Inhibition of the transcriptional kinase CDK7 overcomes therapeutic resistance in HER2-positive breast cancers". Oncogene. 39 (1): 50–63. doi:10.1038/s41388-019-0953-9. PMC 6937212. PMID 31462705.
9. ^ Schneider E, Montenarh M, Wagner P (November 1998). "Regulation of CAK kinase activity by p53". Oncogene. 17 (21): 2733–41. doi:10.1038/sj.onc.1202504. PMID 9840937. S2CID 6281777.
10. ...first patient dosed in phase 1 clinical trial of its oral CDK7 inhibitor: CT7001 2017
11. Kwiatkowski N, et al. (2014). "Targeting transcription regulation in cancer with a covalent CDK7 inhibitor". Nature. 511 (7511): 616–20. Bibcode:2014Natur.511..616K. doi:10.1038/nature13393. PMC 4244910. PMID 25043025.
12. Chow PM, Liu SH, Chang YW, Kuo KL, Lin WC, Huang KH (February 2020). "The covalent CDK7 inhibitor THZ1 enhances temsirolimus-induced cytotoxicity via autophagy suppression in human renal cell carcinoma". Cancer Letters. 471: 27–37. doi:10.1016/j.canlet.2019.12.005. PMID 31812697. S2CID 208956241.
13. Singh R, Bhardwaj VK, Das P, Purohit R (November 2019). "Natural analogues inhibiting selective cyclin-dependent kinase protein isoforms: a computational perspective". Journal of Biomolecular Structure and Dynamics. 38 (17): 5126–5135. doi:10.1080/07391102.2019.1696709. PMID 3176087. S2CID 208276454.
14. Chow PM, Chang YW, Kuo KL, Lin WC, Liu SH, Huang KH (June 2021). "CDK7 Inhibition by THZ1 Suppresses Cancer Stemness in both Chemonaïve and Chemoresistant Urothelial Carcinoma via the Hedgehog Signaling Pathway". Cancer Letters. 507: 70–79. doi:10.1016/j.canlet.2021.03.012. ISSN 0304-3835. PMID 33741425. S2CID 232299392.
15. Lee DK, Duan HO, Chang C (March 2000). "From androgen receptor to the general transcription factor TFIIH. Identification of cdk activating kinase (CAK) as an androgen receptor NH(2)-terminal associated coactivator". The Journal of Biological Chemistry. 275 (13): 9308–13. doi:10.1074/jbc.275.13.9308. PMID 10734072.
16. ^ Yee A, Nichols MA, Wu L, Hall FL, Kobayashi R, Xiong Y (December 1995). "Molecular cloning of CDK7-associated human MAT1, a cyclin-dependent kinase-activating kinase (CAK) assembly factor". Cancer Research. 55 (24): 6058–62. PMID 8521393.
17. Mäkelä TP, Tassan JP, Nigg EA, Frutiger S, Hughes GJ, Weinberg RA (September 1994). "A cyclin associated with the CDK-activating kinase MO15". Nature. 371 (6494): 254–7. Bibcode:1994Natur.371..254M. doi:10.1038/371254a0. PMID 8078587. S2CID 4369898.
18. ^ Garber ME, Mayall TP, Suess EM, Meisenhelder J, Thompson NE, Jones KA (September 2000). "CDK9 autophosphorylation regulates high-affinity binding of the human immunodeficiency virus type 1 tat-P-TEFb complex to TAR RNA". Molecular and Cellular Biology. 20 (18): 6958–69. doi:10.1128/mcb.20.18.6958-6969.2000. PMC 88771. PMID 10958691.
19. ^ Rossignol M, Kolb-Cheynel I, Egly JM (April 1997). "Substrate specificity of the cdk-activating kinase (CAK) is altered upon association with TFIIH". The EMBO Journal. 16 (7): 1628–37. doi:10.1093/emboj/16.7.1628. PMC 1169767. PMID 9130708.
20. Shiekhattar R, Mermelstein F, Fisher RP, Drapkin R, Dynlacht B, Wessling HC, et al. (March 1995). "Cdk-activating kinase complex is a component of human transcription factor TFIIH". Nature. 374 (6519): 283–7. Bibcode:1995Natur.374..283S. doi:10.1038/374283a0. PMID 7533895. S2CID 4282418.
21. Talukder AH, Mishra SK, Mandal M, Balasenthil S, Mehta S, Sahin AA, et al. (March 2003). "MTA1 interacts with MAT1, a cyclin-dependent kinase-activating kinase complex ring finger factor, and regulates estrogen receptor transactivation functions". The Journal of Biological Chemistry. 278 (13): 11676–85. doi:10.1074/jbc.M209570200. PMID 12527756.
22. Ko LJ, Shieh SY, Chen X, Jayaraman L, Tamai K, Taya Y, et al. (December 1997). "p53 is phosphorylated by CDK7-cyclin H in a p36MAT1-dependent manner". Molecular and Cellular Biology. 17 (12): 7220–9. doi:10.1128/mcb.17.12.7220. PMC 232579. PMID 9372954.
23. Giglia-Mari G, Coin F, Ranish JA, Hoogstraten D, Theil A, Wijgers N, et al. (July 2004). "A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A". Nature Genetics. 36 (7): 714–9. doi:10.1038/ng1387. PMID 15220921.

Further reading

• Jeang KT (1998). "Tat, Tat-associated kinase, and transcription". Journal of Biomedical Science. 5 (1): 24–7. doi:10.1007/BF02253352. PMID 9570510.
• Yankulov K, Bentley D (June 1998). "Transcriptional control: Tat cofactors and transcriptional elongation". Current Biology. 8 (13): R447-9. Bibcode:1998CBio....8.R447Y. doi:10.1016/S0960-9822(98)70289-1. PMID 9651670. S2CID 15480646.
• Shiekhattar R, Mermelstein F, Fisher RP, Drapkin R, Dynlacht B, Wessling HC, et al. (March 1995). "Cdk-activating kinase complex is a component of human transcription factor TFIIH". Nature. 374 (6519): 283–7. Bibcode:1995Natur.374..283S. doi:10.1038/374283a0. PMID 7533895. S2CID 4282418.
• Aprelikova O, Xiong Y, Liu ET (August 1995). "Both p16 and p21 families of cyclin-dependent kinase (CDK) inhibitors block the phosphorylation of cyclin-dependent kinases by the CDK-activating kinase". The Journal of Biological Chemistry. 270 (31): 18195–7. doi:10.1074/jbc.270.31.18195. PMID 7629134.
• Serizawa H, Mäkelä TP, Conaway JW, Conaway RC, Weinberg RA, Young RA (March 1995). "Association of Cdk-activating kinase subunits with transcription factor TFIIH". Nature. 374 (6519): 280–2. Bibcode:1995Natur.374..280S. doi:10.1038/374280a0. PMID 7885450. S2CID 4321212.
• Tassan JP, Schultz SJ, Bartek J, Nigg EA (October 1994). "Cell cycle analysis of the activity, subcellular localization, and subunit composition of human CAK (CDK-activating kinase)". The Journal of Cell Biology. 127 (2): 467–78. doi:10.1083/jcb.127.2.467. PMC 2120215. PMID 7929589.
• Darbon JM, Devault A, Taviaux S, Fesquet D, Martinez AM, Galas S, et al. (November 1994). "Cloning, expression and subcellular localization of the human homolog of p40MO15 catalytic subunit of cdk-activating kinase". Oncogene. 9 (11): 3127–38. PMID 7936635.
• Williams RT, Wu L, Carbonaro-Hall DA, Hall FL (October 1994). "Identification, assay, and purification of a Cdc2-activating threonine-161 protein kinase from human cells". Archives of Biochemistry and Biophysics. 314 (1): 99–106. doi:10.1006/abbi.1994.1416. PMID 7944411.
• Mäkelä TP, Tassan JP, Nigg EA, Frutiger S, Hughes GJ, Weinberg RA (September 1994). "A cyclin associated with the CDK-activating kinase MO15". Nature. 371 (6494): 254–7. Bibcode:1994Natur.371..254M. doi:10.1038/371254a0. PMID 8078587. S2CID 4369898.
• Levedakou EN, He M, Baptist EW, Craven RJ, Cance WG, Welcsh PL, et al. (July 1994). "Two novel human serine/threonine kinases with homologies to the cell cycle regulating Xenopus MO15, and NIMA kinases: cloning and characterization of their expression pattern". Oncogene. 9 (7): 1977–88. PMID 8208544.
• Wu L, Yee A, Liu L, Carbonaro-Hall D, Venkatesan N, Tolo VT, Hall FL (July 1994). "Molecular cloning of the human CAK1 gene encoding a cyclin-dependent kinase-activating kinase". Oncogene. 9 (7): 2089–96. PMID 8208556.
• Yee A, Nichols MA, Wu L, Hall FL, Kobayashi R, Xiong Y (December 1995). "Molecular cloning of CDK7-associated human MAT1, a cyclin-dependent kinase-activating kinase (CAK) assembly factor". Cancer Research. 55 (24): 6058–62. PMID 8521393.
• Blau J, Xiao H, McCracken S, O'Hare P, Greenblatt J, Bentley D (May 1996). "Three functional classes of transcriptional activation domain". Molecular and Cellular Biology. 16 (5): 2044–55. doi:10.1128/MCB.16.5.2044. PMC 231191. PMID 8628270.
• Bartkova J, Zemanova M, Bartek J (June 1996). "Expression of CDK7/CAK in normal and tumor cells of diverse histogenesis, cell-cycle position and differentiation". International Journal of Cancer. 66 (6): 732–7. doi:10.1002/(SICI)1097-0215(19960611)66:6<732::AID-IJC4>3.0.CO;2-0. PMID 8647641. S2CID 7244269.
• Reardon JT, Ge H, Gibbs E, Sancar A, Hurwitz J, Pan ZQ (June 1996). "Isolation and characterization of two human transcription factor IIH (TFIIH)-related complexes: ERCC2/CAK and TFIIH". Proceedings of the National Academy of Sciences of the United States of America. 93 (13): 6482–7. Bibcode:1996PNAS...93.6482R. doi:10.1073/pnas.93.13.6482. PMC 39049. PMID 8692841.
• Drapkin R, Le Roy G, Cho H, Akoulitchev S, Reinberg D (June 1996). "Human cyclin-dependent kinase-activating kinase exists in three distinct complexes". Proceedings of the National Academy of Sciences of the United States of America. 93 (13): 6488–93. Bibcode:1996PNAS...93.6488D. doi:10.1073/pnas.93.13.6488. PMC 39050. PMID 8692842.
• Zhou Q, Sharp PA (October 1996). "Tat-SF1: cofactor for stimulation of transcriptional elongation by HIV-1 Tat". Science. 274 (5287): 605–10. Bibcode:1996Sci...274..605Z. doi:10.1126/science.274.5287.605. PMID 8849451. S2CID 13266489.
• Parada CA, Roeder RG (November 1996). "Enhanced processivity of RNA polymerase II triggered by Tat-induced phosphorylation of its carboxy-terminal domain". Nature. 384 (6607): 375–8. Bibcode:1996Natur.384..375P. doi:10.1038/384375a0. PMID 8934526. S2CID 4278432.
• García-Martínez LF, Ivanov D, Gaynor RB (March 1997). "Association of Tat with purified HIV-1 and HIV-2 transcription preinitiation complexes". The Journal of Biological Chemistry. 272 (11): 6951–8. doi:10.1074/jbc.272.11.6951. PMID 9054383.

External links

• CDK7+protein,+human at the U.S. National Library of Medicine Medical Subject Headings (MeSH)
• CDK7 human gene location in the UCSC Genome Browser.
• CDK7 human gene details in the UCSC Genome Browser.
• Overview of all the structural information available in the PDB for UniProt: P50613 (Cyclin-dependent kinase 7) at the PDBe-KB.

• Biology

• Genes on human chromosome 5
• Cell cycle
• Proteins
• EC 2.7.11