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The monophyly of the group is debated, although several synapomorphies characterize the clade, including extremely slender limbs, a compact carpus and an elongate coracoid process.
In 2002, Clark and Sues found a possible sphenosuchian clade of Dibothrosuchus, Sphenosuchus, and possibly Hesperosuchus and Saltoposuchus, with several other genera in unresolved positions (Kayentasuchus, Litargosuchus, Pseudhesperosuchus, and Terrestrisuchus). More recently, however, Clark et al. (2004) argued for the paraphyly of the group, contending that morphological characters were secondarily lost in more highly derived crocodylomorphs. Further analysis and study is required before the group's monophyly is resolved with certainty — a perfect phylogenetic analysis is, at present, impossible due to a paucity of fossil remains demonstrating phylogenetically informative characters.
Below is a cladogram modified from Nesbitt (2011). Sphenosuchians are marked by the green bracket.
^ Lucas, S. G.; Wild, R.; Hunt, A. P. (1998). "Dyoplax O. Fraas, a Triassic sphenosuchian from Germany". Stuttgarter Beiträge zur Naturkunde, B. 263: 1–13.
Michael W. Maisch; Andreas T. Matzke; Thomas Rathgeber (2013). "Re-evaluation of the enigmatic archosaur Dyoplax arenaceus O. Fraas, 1867 from the Schilfsandstein (Stuttgart Formation, lower Carnian, Upper Triassic) of Stuttgart, Germany". Neues Jahrbuch für Geologie und Paläontologie - Abhandlungen. 267 (3): 353–362. doi:10.1127/0077-7749/2013/0317.
Clark, J. M.; Sues, H.-D.; Berman, D. S. (2001). "A new specimen of Hesperosuchus agilis from the Upper Triassic of New Mexico and the interrelationships of basal crocodylomorph archosaurs". Journal of Vertebrate Paleontology. 20 (4): 683–704. doi:10.1671/0272-4634(2000)020[0683:ANSOHA]2.0.CO;2. S2CID7455338.
Harris, Jerald D.; Lucas, Spencer G.; Estep, J. W.; Jianjun Li (2000). "A new and unusual sphenosuchian (Archosauria: Crocodylomorpha) from the Lower Jurassic Lufeng Formation, People's Republic of China". Neues Jahrbuch für Geologie und Paläontologie, Abhandlungen. 215 (1): 47–68. doi:10.1127/njgpa/215/2000/47.