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DDX20

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Protein-coding gene in the species Homo sapiens
DDX20
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

2OXC, 3B7G

Identifiers
AliasesDDX20, DP103, GEMIN3, DEAD-box helicase 20
External IDsOMIM: 606168; MGI: 1858415; HomoloGene: 5214; GeneCards: DDX20; OMA:DDX20 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)
Chromosome 1 (human)Genomic location for DDX20Genomic location for DDX20
Band1p13.2Start111,754,832 bp
End111,775,602 bp
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)
Chromosome 3 (mouse)Genomic location for DDX20Genomic location for DDX20
Band3|3 F2.2Start105,585,586 bp
End105,594,890 bp
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • sperm

  • left testis

  • right testis

  • tibialis anterior muscle

  • secondary oocyte

  • testicle

  • gonad

  • pancreatic epithelial cell

  • mucosa of ileum

  • deltoid muscle
Top expressed in
  • otic placode

  • otic vesicle

  • saccule

  • spermatid

  • seminiferous tubule

  • spermatocyte

  • epiblast

  • genital tubercle

  • maxillary prominence

  • mandibular prominence
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

11218

53975

Ensembl

ENSG00000064703

ENSMUSG00000027905

UniProt

Q9UHI6

Q9JJY4

RefSeq (mRNA)

NM_007204

NM_017397

RefSeq (protein)

NP_009135

NP_059093

Location (UCSC)Chr 1: 111.75 – 111.78 MbChr 3: 105.59 – 105.59 Mb
PubMed search
Wikidata
View/Edit HumanView/Edit Mouse

Probable ATP-dependent RNA helicase DDX20, also known as DEAD-box helicase 20 and gem-associated protein 3 (GEMIN3), is an enzyme that in humans is encoded by the DDX20 gene.

Function

DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, which has an ATPase activity and is a component of the survival of motor neuron (SMN) complex. SMN is the spinal muscular atrophy gene product, and may play a catalytic role in the function of the SMN complex on RNPs.

Clinical significance

Previous research has revealed that DDX20 may act as a tumor suppressor in hepatocellular carcinoma and as a tumor promoter in breast cancer. DDX20 deficiency enhances NF-κB activity by impairing the NF-κB-suppressive action of microRNAs, and suggest that dysregulation of the microRNA machinery components may also be involved in pathogenesis in various human diseases. Such as miRNA-140 which acts as a liver tumor suppressor, and due to a deficiency of DDX20, miRNA-140 function gets impair, this subsequent functional impairment of miRNAs could lead to hepatocarcinogenesis. Similarly, DDX20 may promote the progression of Prostate cancer (PCa) through the NF-κB pathway. In a clinical based study it has been observed that positive DP103/NF-κB feedback loop promotes constitutive NF-κB activation in invasive breast cancers and activation of this pathway is linked to cancer progression and the acquisition of chemotherapy resistance. It makes DP103 has potential as a therapeutic target for breast cancer treatment.

Interactions

DDX20 has been shown to interact with:

References

  1. ^ GRCh38: Ensembl release 89: ENSG00000064703 – Ensembl, May 2017
  2. ^ GRCm38: Ensembl release 89: ENSMUSG00000027905 – Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Grundhoff AT, Kremmer E, Türeci O, Glieden A, Gindorf C, Atz J, et al. (July 1999). "Characterization of DP103, a novel DEAD box protein that binds to the Epstein-Barr virus nuclear proteins EBNA2 and EBNA3C". The Journal of Biological Chemistry. 274 (27): 19136–19144. doi:10.1074/jbc.274.27.19136. PMID 10383418.
  6. ^ "Entrez Gene: DDX20 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20".
  7. Takata A, Otsuka M, Yoshikawa T, Kishikawa T, Kudo Y, Goto T, et al. (April 2012). "A miRNA machinery component DDX20 controls NF-κB via microRNA-140 function". Biochemical and Biophysical Research Communications. 420 (3): 564–569. doi:10.1016/j.bbrc.2012.03.034. PMID 22445758.
  8. Takata A, Otsuka M, Yoshikawa T, Kishikawa T, Hikiba Y, Obi S, et al. (January 2013). "MicroRNA-140 acts as a liver tumor suppressor by controlling NF-κB activity by directly targeting DNA methyltransferase 1 (Dnmt1) expression". Hepatology. 57 (1): 162–170. doi:10.1002/hep.26011. PMC 3521841. PMID 22898998.
  9. Chen W, Zhou P, Li X (June 2016). "High expression of DDX20 enhances the proliferation and metastatic potential of prostate cancer cells through the NF-κB pathway". International Journal of Molecular Medicine. 37 (6): 1551–1557. doi:10.3892/ijmm.2016.2575. PMC 4866965. PMID 27121695.
  10. Shin EM, Hay HS, Lee MH, Goh JN, Tan TZ, Sen YP, et al. (September 2014). "DEAD-box helicase DP103 defines metastatic potential of human breast cancers". The Journal of Clinical Investigation. 124 (9): 3807–3824. doi:10.1172/JCI73451. PMC 4151228. PMID 25083991.
  11. ^ Mourelatos Z, Dostie J, Paushkin S, Sharma A, Charroux B, Abel L, et al. (March 2002). "miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs". Genes & Development. 16 (6): 720–728. doi:10.1101/gad.974702. PMC 155365. PMID 11914277.
  12. Nelson PT, Hatzigeorgiou AG, Mourelatos Z (March 2004). "miRNP:mRNA association in polyribosomes in a human neuronal cell line". RNA. 10 (3): 387–394. doi:10.1261/rna.5181104. PMC 1370934. PMID 14970384.
  13. Charroux B, Pellizzoni L, Perkinson RA, Yong J, Shevchenko A, Mann M, Dreyfuss G (March 2000). "Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli". The Journal of Cell Biology. 148 (6): 1177–1186. doi:10.1083/jcb.148.6.1177. PMC 2174312. PMID 10725331.
  14. Gubitz AK, Mourelatos Z, Abel L, Rappsilber J, Mann M, Dreyfuss G (February 2002). "Gemin5, a novel WD repeat protein component of the SMN complex that binds Sm proteins". The Journal of Biological Chemistry. 277 (7): 5631–5636. doi:10.1074/jbc.M109448200. PMID 11714716.
  15. ^ Charroux B, Pellizzoni L, Perkinson RA, Shevchenko A, Mann M, Dreyfuss G (December 1999). "Gemin3: A novel DEAD box protein that interacts with SMN, the spinal muscular atrophy gene product, and is a component of gems". The Journal of Cell Biology. 147 (6): 1181–1194. doi:10.1083/jcb.147.6.1181. PMC 2168095. PMID 10601333.
  16. Meister G, Bühler D, Laggerbauer B, Zobawa M, Lottspeich F, Fischer U (August 2000). "Characterization of a nuclear 20S complex containing the survival of motor neurons (SMN) protein and a specific subset of spliceosomal Sm proteins". Human Molecular Genetics. 9 (13): 1977–1986. doi:10.1093/hmg/9.13.1977. PMID 10942426.

Further reading

PDB gallery
  • 2oxc: Human DEAD-box RNA helicase DDX20, DEAD domain in complex with ADP 2oxc: Human DEAD-box RNA helicase DDX20, DEAD domain in complex with ADP
Structures of the cell nucleus / nuclear protein
Envelope (membrane)/
nuclear lamina
Nucleolus
Other
SMC protein:
Transition nuclear protein:
see also nucleus diseases
Category: