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From 1998 to 2019, Lee worked with the Office of the Appellate Defender in New York City; from 2003 to 2019 she also served as director of recruitment and outreach at the Office of the Appellate Defender. She joined the office as a staff attorney and was named supervising attorney in 2001. She served as an adjunct assistant professor of clinical law at New York University School of Law from 2003 to 2019, teaching a criminal appellate defense clinic. On January 26, 2022, it was speculated by some media outlets that Lee would be considered by Joe Biden as a nominee to replace Stephen Breyer on the U.S. Supreme Court. Biden ultimately chose U.S. Court of Appeals judge Ketanji Brown Jackson.
Federal judicial service
On May 12, 2021, President Joe Biden nominated Lee to serve as a United States circuit judge for the Second Circuit to the seat vacated by Judge Robert Katzmann, who assumed senior status on January 21, 2021.
On June 9, 2021, a hearing on her nomination was held before the Senate Judiciary Committee. During her confirmation hearing, she distanced herself from the contents of a letter she wrote as an Ohio State undergrad in 1991, which talks about Thomas being a "black conservative." On July 15, 2021, her nomination was reported out of committee by an 11–10 vote, with Senator Lindsey Graham passing on the vote. On August 3, 2021, Majority Leader Chuck Schumer filed cloture on her nomination. On August 5, 2021, the Senate invoked cloture on her nomination by a 50–49 vote. On August 7, 2021, her nomination was confirmed by a 50–47 vote. Upon confirmation, Lee became the longest-serving public defender to ever serve as a judge on a U.S. Court of Appeals. She is the second African American woman ever to serve on the Second Circuit and was the only judge with experience as a federal defender serving on that circuit court until the confirmation of Sarah A. L. Merriam. She received her commission on August 16, 2021.
Notable rulings
In 2021, New York City school administrators and teachers filed suit to halt the vaccine mandate that was implemented due to the COVID-19 pandemic. Lee was part of a panel that ruled the vaccine mandate did not violate the First Amendment. The case was remanded, as the panel's opinion stated the city's mandate was likely unconstitutional.